Variant report

Variant	rs7834279
Chromosome Location	chr8:126386055-126386056
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10505454	0.91[ASN][1000 genomes]
rs10808543	0.80[ASN][1000 genomes]
rs12545259	0.88[ASN][1000 genomes]
rs4255155	1.00[ASN][1000 genomes]
rs4319117	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4871588	1.00[ASN][1000 genomes]
rs6470349	0.91[ASN][1000 genomes]
rs7004468	0.91[ASN][1000 genomes]
rs7814083	0.80[ASN][1000 genomes]
rs7823958	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126375400-126391000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:126377600-126386200	Weak transcription	Ovary	ovary
3	chr8:126380400-126387400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr8:126381800-126386400	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:126382000-126391000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:126382200-126394200	Weak transcription	Thymus	Thymus
7	chr8:126382400-126388600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:126382400-126388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:126382400-126396800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:126384000-126391000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr8:126384200-126396000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr8:126384200-126400200	Weak transcription	NHLF	lung
13	chr8:126384600-126386600	Enhancers	A549	lung
14	chr8:126384600-126388600	Weak transcription	HepG2	liver
15	chr8:126384600-126391000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:126384600-126391200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:126384800-126391000	Weak transcription	Hela-S3	cervix
18	chr8:126385800-126386400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:126385800-126386800	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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