Variant report

Variant	rs7834427
Chromosome Location	chr8:20150631-20150632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:20144491..20147216-chr8:20149456..20152230,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17092129	1.00[AMR][1000 genomes]
rs17092131	1.00[AMR][1000 genomes]
rs17092137	1.00[AMR][1000 genomes]
rs17092173	1.00[AMR][1000 genomes]
rs57880800	1.00[AMR][1000 genomes]
rs59666177	1.00[AMR][1000 genomes]
rs903995	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv890644	chr8:20138477-20162213	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20144200-20154800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:20145800-20155000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:20146000-20152000	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:20146200-20152000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:20147200-20151800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:20147400-20152600	Weak transcription	Right Atrium	heart
7	chr8:20147600-20153400	Weak transcription	Fetal Brain Male	brain
8	chr8:20148200-20151200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:20148600-20151200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:20148600-20151800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr8:20148600-20152400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:20148600-20160400	Weak transcription	Ovary	ovary
13	chr8:20149000-20151000	Strong transcription	Dnd41	blood
14	chr8:20149000-20152600	Weak transcription	Fetal Brain Female	brain
15	chr8:20149000-20153600	Weak transcription	NHLF	lung
16	chr8:20149200-20151400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:20149400-20151000	Strong transcription	Brain Germinal Matrix	brain
18	chr8:20149600-20151400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:20149800-20151800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:20149800-20154800	Weak transcription	Primary T cells from cord blood	blood
21	chr8:20150000-20151200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:20150000-20151800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:20150000-20152200	Weak transcription	Brain Anterior Caudate	brain
24	chr8:20150000-20156400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr8:20150200-20150800	Weak transcription	HSMM	muscle
26	chr8:20150200-20151600	Weak transcription	HSMMtube	muscle
27	chr8:20150200-20158800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr8:20150400-20151200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
29	chr8:20150400-20151200	Weak transcription	Fetal Muscle Leg	muscle
30	chr8:20150400-20151200	Strong transcription	Fetal Stomach	stomach
31	chr8:20150600-20150800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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