Variant report

Variant	rs7835021
Chromosome Location	chr8:126014949-126014950
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:126014772-126015047	K562	blood:	n/a	chr8:126014869-126014880
2	CEBPB	chr8:126014776-126014967	HepG2	liver:	n/a	chr8:126014869-126014880
3	CEBPB	chr8:126014771-126014988	H1-hESC	embryonic stem cell:	n/a	chr8:126014869-126014880
4	CEBPB	chr8:126014770-126015042	HepG2	liver:	n/a	chr8:126014869-126014880

No.	Distal block	Cell Line	Cell type
1	chr8:126009840..126012235-chr8:126013195..126016110,4	K562	blood:
2	chr8:126013869..126016099-chr8:126016207..126018395,2	K562	blood:
3	chr8:125866182..125867847-chr8:126013672..126016606,2	MCF-7	breast:
4	chr8:126014428..126016789-chr8:126018572..126020682,2	K562	blood:
5	chr8:125981986..125989189-chr8:126007056..126015447,32	MCF-7	breast:
6	chr8:125549374..125552995-chr8:126009841..126015179,7	MCF-7	breast:
7	chr8:126014427..126016816-chr8:126029533..126032049,2	K562	blood:

Variant related genes	Relation type
ENSG00000253513	TF binding region
ENSG00000104549	Chromatin interaction
ENSG00000253513	Chromatin interaction
ENSG00000147687	Chromatin interaction
ENSG00000147684	Chromatin interaction
ENSG00000180938	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10283187	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030748	chr8:126012282-126137840	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv539743	chr8:126012282-126137840	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126009800-126015000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr8:126009800-126015000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:126009800-126015000	Active TSS	Brain Cingulate Gyrus	brain
4	chr8:126010000-126015000	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr8:126010000-126015200	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr8:126010000-126015400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:126010200-126015000	Active TSS	H1 Cell Line	embryonic stem cell
8	chr8:126010200-126015400	Active TSS	GM12878-XiMat	blood
9	chr8:126010200-126016400	Active TSS	Fetal Brain Female	brain
10	chr8:126011000-126015600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:126011600-126016600	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:126011800-126016600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:126011800-126034000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr8:126012400-126029200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:126012600-126017400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr8:126012600-126017600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:126012600-126017800	Weak transcription	Psoas Muscle	Psoas
18	chr8:126012600-126019800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr8:126012600-126020400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr8:126012600-126020400	Weak transcription	Left Ventricle	heart
21	chr8:126012600-126027000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr8:126012600-126029000	Weak transcription	Colonic Mucosa	Colon
23	chr8:126013000-126016600	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:126013200-126015000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:126013200-126015400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:126013200-126015400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:126013200-126018000	Transcr. at gene 5' and 3'	Dnd41	blood
28	chr8:126013200-126019600	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr8:126013200-126024200	Weak transcription	Gastric	stomach
30	chr8:126013200-126028200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr8:126013200-126029200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr8:126013400-126015400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr8:126013400-126017600	Weak transcription	Adipose Nuclei	Adipose
34	chr8:126013400-126017800	Weak transcription	Fetal Intestine Large	intestine
35	chr8:126013400-126029200	Weak transcription	Lung	lung
36	chr8:126013400-126029200	Weak transcription	Spleen	Spleen
37	chr8:126013400-126029400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr8:126013400-126040400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr8:126013400-126042600	Weak transcription	Right Ventricle	heart
40	chr8:126013600-126015000	Enhancers	Fetal Lung	lung
41	chr8:126013600-126015400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr8:126013600-126018000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr8:126013600-126019600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr8:126013600-126020800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:126013600-126024000	Weak transcription	Fetal Kidney	kidney
46	chr8:126013600-126024200	Weak transcription	Primary T cells from cord blood	blood
47	chr8:126013600-126028800	Weak transcription	Thymus	Thymus
48	chr8:126013600-126052200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr8:126013800-126015200	Weak transcription	Primary B cells from cord blood	blood
50	chr8:126013800-126015400	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links