Variant report

Variant	rs7835120
Chromosome Location	chr8:98994154-98994155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:98985735..98990217-chr8:98991050..98995817,5	K562	blood:
2	chr8:98992573..98995424-chr8:98996000..98998679,2	MCF-7	breast:
3	chr8:98786769..98788995-chr8:98993109..98995354,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104341	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12546715	0.80[EUR][1000 genomes]
rs13268771	0.80[EUR][1000 genomes]
rs4735517	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57279022	0.80[EUR][1000 genomes]
rs6468607	0.82[AFR][1000 genomes]
rs6468608	0.81[AFR][1000 genomes]
rs6987225	0.85[CEU][hapmap]
rs7835897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs977795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv528695	chr8:98960813-99022009	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:98976200-98996200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:98980200-98994800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:98985600-98995800	Weak transcription	A549	lung
4	chr8:98986000-98997400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:98987400-98998400	Weak transcription	Pancreas	Pancrea
6	chr8:98988000-99011800	Weak transcription	Aorta	Aorta
7	chr8:98989200-98997200	Weak transcription	Liver	Liver
8	chr8:98990600-98997200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:98990800-98997000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:98991000-98994200	Enhancers	NHDF-Ad	bronchial
11	chr8:98991000-98997800	Enhancers	Osteobl	bone
12	chr8:98991200-98994200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:98991200-98994600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:98991400-98994400	Enhancers	NH-A	brain
15	chr8:98991400-98994600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:98991600-98994400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr8:98991600-98994400	Enhancers	HSMM	muscle
18	chr8:98992200-98994600	Enhancers	Brain Hippocampus Middle	brain
19	chr8:98992200-98996400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:98992200-98998200	Enhancers	NHLF	lung
21	chr8:98992400-98994200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:98992600-98995800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:98992600-98996000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:98992600-98996000	Weak transcription	HMEC	breast
25	chr8:98992600-99019400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr8:98992800-98996400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:98992800-98996600	Weak transcription	NHEK	skin
28	chr8:98993200-98994600	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr8:98993200-98994600	Genic enhancers	Fetal Muscle Trunk	muscle
30	chr8:98993400-98994200	Strong transcription	Duodenum Mucosa	Duodenum
31	chr8:98993400-98995800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr8:98993600-98994200	Enhancers	Right Atrium	heart
33	chr8:98993600-98994600	Enhancers	Brain Angular Gyrus	brain
34	chr8:98993600-98994600	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr8:98993600-98994600	Enhancers	Ovary	ovary
36	chr8:98993800-98994200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr8:98993800-98994200	Enhancers	Gastric	stomach
38	chr8:98993800-98994200	Enhancers	Spleen	Spleen
39	chr8:98993800-98994400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr8:98993800-98994400	Enhancers	Brain Substantia Nigra	brain
41	chr8:98993800-98994400	Enhancers	Esophagus	oesophagus
42	chr8:98993800-98994400	Enhancers	Placenta	Placenta
43	chr8:98993800-98994400	Enhancers	Right Ventricle	heart
44	chr8:98993800-98994400	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr8:98993800-98994600	Enhancers	Brain Anterior Caudate	brain
46	chr8:98993800-98994600	Enhancers	Brain Cingulate Gyrus	brain
47	chr8:98993800-98994600	Enhancers	Fetal Lung	lung
48	chr8:98994000-98994200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr8:98994000-98994200	Enhancers	Adipose Nuclei	Adipose
50	chr8:98994000-98994200	Enhancers	Duodenum Smooth Muscle	Duodenum

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