Variant report

Variant	rs7835563
Chromosome Location	chr8:20233203-20233204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:20042078..20043029-chr8:20233107..20233929,2	K562	blood:
2	chr8:20080349..20082328-chr8:20233127..20234370,21	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17412929	0.85[AFR][1000 genomes]
rs58715737	1.00[AMR][1000 genomes]
rs6993828	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7009554	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73612017	1.00[AMR][1000 genomes]
rs73612020	1.00[AMR][1000 genomes]
rs73612025	1.00[AMR][1000 genomes]
rs7815326	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv831256	chr8:20162233-20300224	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2758152	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759603	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20227200-20233400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:20227200-20234000	Weak transcription	HSMMtube	muscle
3	chr8:20230800-20234200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:20231400-20234800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:20231800-20233600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr8:20232000-20234800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:20232000-20235600	Weak transcription	HMEC	breast
8	chr8:20232200-20233800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr8:20232400-20233400	Weak transcription	HSMM	muscle
10	chr8:20232400-20234000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:20232400-20236000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:20232400-20236600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:20232400-20242600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:20232600-20234000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:20232600-20234000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr8:20232800-20233600	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr8:20232800-20233800	Enhancers	Fetal Brain Male	brain
18	chr8:20232800-20234800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr8:20233000-20233400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr8:20233000-20233400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:20233000-20234200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr8:20233000-20234200	Enhancers	Adipose Nuclei	Adipose
23	chr8:20233000-20234800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr8:20233000-20236600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr8:20233200-20233400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:20233200-20233400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr8:20233200-20234200	Enhancers	Brain Anterior Caudate	brain
28	chr8:20233200-20234800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:20233200-20234800	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr8:20233200-20234800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr8:20233200-20235000	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr8:20233200-20239000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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