Variant report

Variant	rs7836010
Chromosome Location	chr8:118861367-118861368
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10104591	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs13270313	1.00[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[ASN][1000 genomes]
rs13270460	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4262351	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4322034	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4490876	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs4509363	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4612367	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4876394	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6469713	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9643118	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831439	chr8:118747352-118899118	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118846600-118861800	Weak transcription	HUVEC	blood vessel
2	chr8:118849600-118865800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:118855800-118862400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr8:118855800-118866200	Weak transcription	Liver	Liver
5	chr8:118857600-118862600	Weak transcription	Stomach Mucosa	stomach
6	chr8:118857600-118865800	Weak transcription	Fetal Intestine Small	intestine
7	chr8:118858000-118863600	Enhancers	Fetal Heart	heart
8	chr8:118858200-118862200	Weak transcription	Small Intestine	intestine
9	chr8:118858400-118861800	Enhancers	HSMMtube	muscle
10	chr8:118858400-118863400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:118858600-118863600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:118858800-118861400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:118858800-118861600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:118858800-118861600	Enhancers	Left Ventricle	heart
15	chr8:118858800-118861600	Enhancers	Pancreas	Pancrea
16	chr8:118858800-118863400	Enhancers	HSMM	muscle
17	chr8:118858800-118863800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr8:118858800-118864000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr8:118858800-118865200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:118859000-118861400	Enhancers	Right Atrium	heart
21	chr8:118859000-118864600	Enhancers	Osteobl	bone
22	chr8:118859200-118861600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:118859200-118862400	Enhancers	NHDF-Ad	bronchial
24	chr8:118859200-118862600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:118859200-118863400	Enhancers	NH-A	brain
26	chr8:118859400-118861600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr8:118859400-118861800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:118859400-118863400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:118859400-118863600	Enhancers	Fetal Muscle Leg	muscle
30	chr8:118859600-118861600	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr8:118859600-118861600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:118859600-118861800	Enhancers	Colon Smooth Muscle	Colon
33	chr8:118859600-118864000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:118859600-118864200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:118859800-118861400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr8:118859800-118861600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr8:118859800-118862200	Enhancers	Rectal Smooth Muscle	rectum
38	chr8:118860000-118861400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:118860000-118863400	Enhancers	Fetal Lung	lung
40	chr8:118860200-118862000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:118860200-118862200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr8:118860400-118861400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr8:118860400-118861400	Enhancers	Psoas Muscle	Psoas
44	chr8:118860400-118862400	Enhancers	Stomach Smooth Muscle	stomach
45	chr8:118860600-118861400	Enhancers	Aorta	Aorta
46	chr8:118860600-118864200	Enhancers	NHEK	skin
47	chr8:118860800-118861600	Genic enhancers	NHLF	lung
48	chr8:118860800-118862200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr8:118860800-118863000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr8:118860800-118864000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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