Variant report

Variant	rs78360699
Chromosome Location	chr18:10749-10750
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr18:9919-10796	PANC-1	pancreas:	n/a	n/a
2	GABPA	chr18:10537-10970	H1-hESC	embryonic stem cell:	n/a	n/a
3	FOXA2	chr18:9945-10851	A549	lung:	n/a	n/a
4	POLR2A	chr18:9914-10848	GM12891	blood:	n/a	n/a
5	RAD21	chr18:10592-10817	H1-hESC	embryonic stem cell:	n/a	n/a
6	NFIC	chr18:9912-10784	GM12878	blood:	n/a	n/a
7	ZBTB33	chr18:9913-10817	K562	blood:	n/a	n/a
8	POU2F2	chr18:9934-10750	GM12891	blood:	n/a	n/a
9	CBX3	chr18:9952-10758	K562	blood:	n/a	n/a
10	ZBTB33	chr18:9917-10758	HepG2	liver:	n/a	n/a
11	CEBPB	chr18:9933-10821	GM12878	blood:	n/a	n/a
12	ZBTB33	chr18:9930-10755	GM12878	blood:	n/a	n/a
13	POU2F2	chr18:9924-10794	GM12878	blood:	n/a	n/a
14	POLR2A	chr18:9915-10813	GM12878	blood:	n/a	n/a
15	TRIM28	chr18:9919-10789	K562	blood:	n/a	n/a
16	SPI1	chr18:9858-10791	GM12878	blood:	n/a	n/a
17	POLR2A	chr18:9922-10801	SK-N-SH	brain:	n/a	n/a
18	ZBTB33	chr18:9911-10803	GM12878	blood:	n/a	n/a
19	NR2F2	chr18:9902-10835	K562	blood:	n/a	n/a
20	CBX3	chr18:9926-10815	K562	blood:	n/a	n/a
21	NR2C2	chr18:10424-10782	GM12878	blood:	n/a	n/a
22	CEBPB	chr18:9854-10855	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr18:10530-10863	HL-60	blood:	n/a	n/a
24	SIX5	chr18:9875-10935	A549	lung:	n/a	n/a
25	POLR2A	chr18:9881-10890	GM12892	blood:	n/a	n/a
26	TCF3	chr18:9939-11126	GM12878	blood:	n/a	n/a
27	PAX5	chr18:9906-10800	GM12878	blood:	n/a	n/a
28	POLR2A	chr18:9848-10907	PFSK-1	brain:	n/a	n/a
29	POU2F2	chr18:9900-10839	GM12891	blood:	n/a	n/a
30	POLR2A	chr18:10386-10902	HL-60	blood:	n/a	n/a
31	POLR2A	chr18:9884-10878	U87	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000262352	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv978590	chr18:10001-16279	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv9599	chr18:10001-68441	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv909285	chr18:10001-196829	Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3367050	chr18:10252-15150	Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3324470	chr18:10468-63727	Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3343280	chr18:10652-15050	Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv21286	chr18:10657-105963	ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8800-11200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr18:10000-11000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:10000-13600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr18:10400-11800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:10600-10800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr18:10600-10800	Flanking Active TSS	Placenta	Placenta
7	chr18:10600-11800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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