Variant report

Variant	rs7836536
Chromosome Location	chr8:131209281-131209282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131207362..131209756-chr8:131210863..131213512,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1030386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11993716	0.93[ASN][1000 genomes]
rs12675936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12676014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12676536	0.85[ASN][1000 genomes]
rs12676577	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12676977	0.85[ASN][1000 genomes]
rs12681590	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13253189	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13256967	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13269931	0.85[ASN][1000 genomes]
rs16904201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16904220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16904228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2114197	1.00[CEU][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34387098	0.85[ASN][1000 genomes]
rs34857454	0.85[ASN][1000 genomes]
rs36004599	0.85[ASN][1000 genomes]
rs55815182	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56086422	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58012966	0.85[ASN][1000 genomes]
rs61558949	0.93[ASN][1000 genomes]
rs6986746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7006658	0.93[ASN][1000 genomes]
rs7014715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017795	0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7018391	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs73425364	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7822764	1.00[CEU][hapmap];0.94[YRI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7837833	0.82[CHB][hapmap]
rs897050	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9942745	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv831461	chr8:131159819-131302900	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131172200-131211600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr8:131172800-131210800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:131179600-131218400	Weak transcription	Thymus	Thymus
4	chr8:131181000-131224600	Weak transcription	Hela-S3	cervix
5	chr8:131181200-131229000	Weak transcription	Aorta	Aorta
6	chr8:131195000-131224200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:131195200-131212400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr8:131199200-131210600	Weak transcription	Fetal Intestine Small	intestine
9	chr8:131199200-131216800	Weak transcription	Stomach Mucosa	stomach
10	chr8:131199200-131229200	Weak transcription	Fetal Lung	lung
11	chr8:131200200-131212600	Weak transcription	Liver	Liver
12	chr8:131200600-131211000	Weak transcription	Adipose Nuclei	Adipose
13	chr8:131200600-131215600	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:131200600-131218400	Weak transcription	HepG2	liver
15	chr8:131200600-131224600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr8:131200600-131224800	Weak transcription	Placenta	Placenta
17	chr8:131200600-131246600	Weak transcription	Pancreas	Pancrea
18	chr8:131205200-131215400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr8:131206000-131210000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr8:131206000-131212200	Enhancers	Brain Substantia Nigra	brain
21	chr8:131206200-131213400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr8:131206400-131210000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr8:131206600-131210000	Enhancers	Brain Anterior Caudate	brain
24	chr8:131206600-131211800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr8:131207000-131211600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr8:131207000-131212000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr8:131207000-131212600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr8:131207200-131211000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr8:131207200-131211200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr8:131207200-131211200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr8:131207200-131211400	Weak transcription	HSMMtube	muscle
32	chr8:131207200-131211400	Enhancers	Osteobl	bone
33	chr8:131207200-131211600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr8:131207200-131211600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr8:131207200-131213200	Weak transcription	GM12878-XiMat	blood
36	chr8:131207200-131215600	Weak transcription	Lung	lung
37	chr8:131207400-131212200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr8:131207600-131209400	Enhancers	H1 Cell Line	embryonic stem cell
39	chr8:131207600-131210600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr8:131207600-131211000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr8:131207600-131212200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr8:131207600-131212200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr8:131207600-131212400	Weak transcription	Small Intestine	intestine
44	chr8:131207800-131209400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr8:131207800-131211200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr8:131207800-131211200	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr8:131207800-131211800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr8:131207800-131212000	Weak transcription	Primary B cells from cord blood	blood
49	chr8:131207800-131212400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr8:131207800-131218400	Enhancers	Primary neutrophils fromperipheralblood	blood

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