Variant report
| Variant | rs7836577 |
|---|---|
| Chromosome Location | chr8:39703449-39703450 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:11967073..11969451-chr8:39703081..39706081,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000199347 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10089078 | 0.82[CEU][hapmap];0.84[GIH][hapmap] |
| rs10089084 | 0.82[CEU][hapmap];0.87[GIH][hapmap] |
| rs10108662 | 0.84[GIH][hapmap] |
| rs10113749 | 0.82[ASN][1000 genomes] |
| rs11994361 | 0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs13262414 | 0.86[ASN][1000 genomes] |
| rs13281072 | 0.90[ASN][1000 genomes] |
| rs202003 | 0.84[JPT][hapmap] |
| rs35003122 | 0.91[ASN][1000 genomes] |
| rs7004755 | 0.82[ASN][1000 genomes] |
| rs7820268 | 0.83[GIH][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015907 | chr8:38967169-39718559 | Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv539550 | chr8:38967169-39718559 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv539555 | chr8:39683857-40673606 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7836577 | SLC20A2 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
