Variant report

Variant	rs7837938
Chromosome Location	chr8:124417161-124417162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124409346..124411086-chr8:124417132..124419397,2	K562	blood:
2	chr8:124416051..124418848-chr8:124419770..124421913,2	MCF-7	breast:
3	chr8:124415153..124417409-chr8:124424066..124426465,2	K562	blood:
4	chr8:124412543..124415333-chr8:124416602..124418782,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254294	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10108519	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3912357	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124409400-124419200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr8:124409400-124421400	Weak transcription	Right Ventricle	heart
3	chr8:124409400-124424800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:124409400-124427600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:124409400-124427600	Weak transcription	A549	lung
6	chr8:124409400-124428000	Weak transcription	Brain Anterior Caudate	brain
7	chr8:124409600-124417800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:124409600-124424600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:124409600-124424800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:124409800-124424600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:124409800-124427800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:124414400-124425000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:124415600-124418800	Weak transcription	Gastric	stomach
14	chr8:124416200-124424200	Weak transcription	Ovary	ovary
15	chr8:124416200-124424800	Weak transcription	Fetal Intestine Small	intestine
16	chr8:124416200-124425800	Weak transcription	Left Ventricle	heart
17	chr8:124416200-124427800	Weak transcription	Pancreas	Pancrea
18	chr8:124416800-124417200	Enhancers	HepG2	liver
19	chr8:124416800-124417800	Weak transcription	Liver	Liver
20	chr8:124416800-124424200	Weak transcription	Fetal Heart	heart

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