Variant report

Variant	rs7838644
Chromosome Location	chr8:60710639-60710640
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2175386	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6471802	1.00[EUR][1000 genomes]
rs6998047	1.00[EUR][1000 genomes]
rs7001319	1.00[EUR][1000 genomes]
rs7001326	1.00[EUR][1000 genomes]
rs7006217	1.00[EUR][1000 genomes]
rs73684145	1.00[EUR][1000 genomes]
rs7841072	1.00[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60709800-60711000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:60710000-60710800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:60710000-60711000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:60710200-60710800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:60710200-60710800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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