Variant report

Variant	rs7838835
Chromosome Location	chr8:124292630-124292631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr8:124292460-124292906	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124286614..124288991-chr8:124291272..124295391,4	K562	blood:
2	chr8:124291683..124293792-chr8:124295777..124297657,2	K562	blood:
3	chr8:124289689..124292455-chr8:124292492..124294861,2	MCF-7	breast:
4	chr8:124283676..124286513-chr8:124291372..124294065,4	K562	blood:
5	chr8:124258264..124261047-chr8:124292328..124294678,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16898214	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16898375	1.00[CHD][hapmap]
rs55877745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57012943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57790492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57891828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59703567	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7009541	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1015249	chr8:124103504-124373949	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539741	chr8:124103504-124373949	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124287800-124301200	Weak transcription	Esophagus	oesophagus
2	chr8:124288200-124298200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:124288200-124298400	Weak transcription	Right Atrium	heart
4	chr8:124289200-124293000	Weak transcription	Placenta	Placenta
5	chr8:124289400-124296800	Weak transcription	Brain Substantia Nigra	brain
6	chr8:124289400-124297000	Weak transcription	Brain Germinal Matrix	brain
7	chr8:124289400-124298000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:124289800-124293000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:124289800-124294600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:124289800-124296200	Weak transcription	Fetal Brain Female	brain
11	chr8:124291600-124296800	Weak transcription	Brain Anterior Caudate	brain
12	chr8:124291600-124297400	Weak transcription	Brain Angular Gyrus	brain
13	chr8:124292000-124296800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr8:124292000-124296800	Weak transcription	Brain Hippocampus Middle	brain
15	chr8:124292200-124296200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:124292400-124292800	Flanking Active TSS	HepG2	liver
17	chr8:124292600-124296200	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links