Variant report

Variant	rs7839261
Chromosome Location	chr8:119080559-119080560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119073070..119075037-chr8:119078486..119081201,2	MCF-7	breast:
2	chr8:119078696..119080896-chr8:119086138..119088865,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11562697	0.82[YRI][hapmap]
rs11562738	1.00[CHD][hapmap]
rs11987653	1.00[EUR][1000 genomes]
rs17476191	1.00[EUR][1000 genomes]
rs17476219	1.00[EUR][1000 genomes]
rs17476875	1.00[EUR][1000 genomes]
rs17477049	1.00[EUR][1000 genomes]
rs17477133	1.00[EUR][1000 genomes]
rs17505016	1.00[EUR][1000 genomes]
rs17505030	1.00[EUR][1000 genomes]
rs17505037	1.00[EUR][1000 genomes]
rs17505079	1.00[EUR][1000 genomes]
rs17506044	1.00[EUR][1000 genomes]
rs58461375	1.00[EUR][1000 genomes]
rs59506704	1.00[AMR][1000 genomes]
rs73327854	1.00[EUR][1000 genomes]
rs7829932	0.82[YRI][hapmap]
rs7845466	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv831441	chr8:119055370-119262970	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2752195	chr8:119058819-119139819	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv526044	chr8:119079196-119082204	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119062200-119083600	Weak transcription	Fetal Muscle Leg	muscle
2	chr8:119062800-119085000	Weak transcription	Fetal Stomach	stomach
3	chr8:119068000-119085600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:119069000-119081200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr8:119069200-119081200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:119069200-119091600	Weak transcription	Primary T cells from cord blood	blood
7	chr8:119073400-119083400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:119074000-119086200	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:119074000-119087200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:119074800-119086400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:119074800-119088600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:119075000-119102000	Weak transcription	Spleen	Spleen
13	chr8:119075600-119086000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr8:119075800-119081200	Weak transcription	Adipose Nuclei	Adipose
15	chr8:119075800-119081200	Weak transcription	Psoas Muscle	Psoas
16	chr8:119075800-119081400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr8:119075800-119083600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:119075800-119085800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:119075800-119086200	Weak transcription	Right Atrium	heart
20	chr8:119075800-119086400	Weak transcription	Brain Anterior Caudate	brain
21	chr8:119076000-119081200	Weak transcription	Fetal Lung	lung
22	chr8:119076000-119081200	Weak transcription	Small Intestine	intestine
23	chr8:119076000-119081200	Weak transcription	NHDF-Ad	bronchial
24	chr8:119076000-119086200	Weak transcription	Right Ventricle	heart
25	chr8:119076400-119086200	Weak transcription	Left Ventricle	heart
26	chr8:119076400-119086200	Weak transcription	Lung	lung
27	chr8:119077400-119080600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr8:119077400-119082000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:119078000-119081400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:119078000-119099000	Weak transcription	Dnd41	blood
31	chr8:119078200-119080600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:119078200-119081000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr8:119078200-119083600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr8:119078200-119085200	Weak transcription	Fetal Brain Male	brain
35	chr8:119078400-119081200	Weak transcription	HUVEC	blood vessel
36	chr8:119078400-119085800	Weak transcription	Fetal Heart	heart
37	chr8:119078400-119086600	Weak transcription	Pancreas	Pancrea
38	chr8:119078400-119088400	Weak transcription	Hela-S3	cervix
39	chr8:119078400-119091600	Weak transcription	Gastric	stomach
40	chr8:119078600-119081400	Weak transcription	Fetal Intestine Large	intestine
41	chr8:119079000-119081200	Weak transcription	Fetal Intestine Small	intestine
42	chr8:119079200-119086200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr8:119079200-119086400	Weak transcription	Brain Substantia Nigra	brain
44	chr8:119079400-119080600	Enhancers	Esophagus	oesophagus
45	chr8:119079400-119080800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr8:119079400-119081800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr8:119079400-119082200	Strong transcription	NHEK	skin
48	chr8:119079600-119080600	Enhancers	Rectal Smooth Muscle	rectum
49	chr8:119079600-119080600	Enhancers	Stomach Smooth Muscle	stomach
50	chr8:119079600-119081200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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