Variant report

Variant	rs7839661
Chromosome Location	chr8:52590367-52590368
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10088109	0.91[ASN][1000 genomes]
rs10090123	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10090972	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10091454	0.86[EUR][1000 genomes]
rs10101657	0.91[ASN][1000 genomes]
rs10106091	0.88[EUR][1000 genomes]
rs10109862	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10112473	0.91[ASN][1000 genomes]
rs10113743	0.91[ASN][1000 genomes]
rs10958295	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10958296	0.88[EUR][1000 genomes]
rs10958297	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12541234	0.88[ASN][1000 genomes]
rs12549383	0.88[ASN][1000 genomes]
rs12678094	0.88[ASN][1000 genomes]
rs1317774	0.92[EUR][1000 genomes]
rs13251959	0.83[EUR][1000 genomes]
rs13251960	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252521	0.88[ASN][1000 genomes]
rs13259819	0.91[ASN][1000 genomes]
rs13268396	0.82[EUR][1000 genomes]
rs13268711	0.82[EUR][1000 genomes]
rs13270001	0.85[EUR][1000 genomes]
rs13274101	0.83[EUR][1000 genomes]
rs13277004	0.88[EUR][1000 genomes]
rs13279413	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439031	0.88[ASN][1000 genomes]
rs16916741	0.88[EUR][1000 genomes]
rs16916756	0.82[EUR][1000 genomes]
rs16916763	0.83[EUR][1000 genomes]
rs28512421	0.86[EUR][1000 genomes]
rs28549751	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28616568	0.87[EUR][1000 genomes]
rs2976204	0.88[ASN][1000 genomes]
rs2976209	0.88[EUR][1000 genomes]
rs34342438	0.87[EUR][1000 genomes]
rs34773755	0.88[ASN][1000 genomes]
rs35153909	0.83[EUR][1000 genomes]
rs35195931	0.87[EUR][1000 genomes]
rs35326600	0.88[ASN][1000 genomes]
rs36075262	0.88[EUR][1000 genomes]
rs4242472	0.82[EUR][1000 genomes]
rs4275221	0.82[EUR][1000 genomes]
rs4326377	0.84[EUR][1000 genomes]
rs4382468	0.91[ASN][1000 genomes]
rs4397396	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4400372	0.88[EUR][1000 genomes]
rs4407875	0.91[ASN][1000 genomes]
rs4421345	0.91[ASN][1000 genomes]
rs4541902	0.85[ASN][1000 genomes]
rs4621801	0.89[ASN][1000 genomes]
rs4873200	0.91[ASN][1000 genomes]
rs4873201	0.84[EUR][1000 genomes]
rs4873570	0.83[ASN][1000 genomes]
rs4873571	0.91[ASN][1000 genomes]
rs4873572	0.89[EUR][1000 genomes]
rs4873573	0.83[EUR][1000 genomes]
rs4873575	0.86[EUR][1000 genomes]
rs4873576	0.88[ASN][1000 genomes]
rs4873584	0.82[EUR][1000 genomes]
rs5000332	0.91[ASN][1000 genomes]
rs55701628	0.87[EUR][1000 genomes]
rs6473637	0.91[ASN][1000 genomes]
rs6473638	0.91[ASN][1000 genomes]
rs6981260	0.88[EUR][1000 genomes]
rs6986571	0.88[EUR][1000 genomes]
rs6986605	0.88[EUR][1000 genomes]
rs6988401	0.91[ASN][1000 genomes]
rs6999693	0.88[EUR][1000 genomes]
rs7005788	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7007671	0.88[EUR][1000 genomes]
rs7007741	1.00[ASN][1000 genomes]
rs7007804	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7011666	0.87[EUR][1000 genomes]
rs7012655	0.80[ASN][1000 genomes]
rs7014372	0.87[ASN][1000 genomes]
rs7830013	0.88[ASN][1000 genomes]
rs8180923	0.83[ASN][1000 genomes]
rs9284000	0.91[ASN][1000 genomes]
rs9643788	0.88[EUR][1000 genomes]
rs9650303	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv831313	chr8:52458835-52638968	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv890898	chr8:52579964-52680933	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52580800-52598800	Weak transcription	Right Atrium	heart
2	chr8:52585000-52595000	Weak transcription	Left Ventricle	heart
3	chr8:52589000-52590800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:52590000-52590600	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links