Variant report

Variant	rs78400048
Chromosome Location	chr5:58519409-58519410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1023570	chr5:58486384-58537849	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv881703	chr5:58517918-58540847	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58474400-58520000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:58506400-58520400	Weak transcription	Stomach Mucosa	stomach
3	chr5:58510400-58520000	Weak transcription	Right Ventricle	heart
4	chr5:58511800-58521600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:58512800-58532400	Weak transcription	Pancreas	Pancrea
6	chr5:58516000-58530600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:58516200-58531000	Weak transcription	Psoas Muscle	Psoas
8	chr5:58517200-58519600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr5:58517200-58519800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:58517800-58520200	Enhancers	Colon Smooth Muscle	Colon
11	chr5:58518000-58520400	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr5:58518400-58520200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr5:58518400-58520400	Enhancers	Hela-S3	cervix
14	chr5:58518400-58527000	Weak transcription	Fetal Heart	heart
15	chr5:58518600-58519600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:58518800-58519600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:58519200-58520200	Enhancers	HUVEC	blood vessel
18	chr5:58519200-58523400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:58519200-58535000	Weak transcription	Left Ventricle	heart
20	chr5:58519400-58520200	Weak transcription	Fetal Intestine Large	intestine
21	chr5:58519400-58520400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr5:58519400-58520400	Enhancers	A549	lung
23	chr5:58519400-58523600	Weak transcription	Fetal Kidney	kidney
24	chr5:58519400-58524000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr5:58519400-58529600	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links