Variant report

Variant	rs7840217
Chromosome Location	chr8:121168329-121168330
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10505376	0.80[JPT][hapmap]
rs10808506	0.80[JPT][hapmap]
rs11780985	0.80[JPT][hapmap]
rs16893478	0.80[JPT][hapmap]
rs16893536	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs16893570	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs17226296	0.80[JPT][hapmap]
rs2875931	0.80[JPT][hapmap]
rs35420329	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4398968	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4427214	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4541974	0.88[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469895	0.80[JPT][hapmap]
rs7000436	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7007998	0.80[JPT][hapmap]
rs73317765	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73317770	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73317791	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319711	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816925	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822662	0.80[JPT][hapmap]
rs7829116	0.80[JPT][hapmap]
rs7841621	0.80[JPT][hapmap]
rs7843503	0.80[JPT][hapmap]
rs960887	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121154600-121173800	Weak transcription	Fetal Stomach	stomach
2	chr8:121154600-121175200	Weak transcription	Aorta	Aorta
3	chr8:121155400-121170600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:121159600-121186200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:121162400-121173200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:121165600-121174600	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:121165600-121176800	Weak transcription	Psoas Muscle	Psoas
8	chr8:121166400-121177000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:121166400-121177600	Weak transcription	Placenta	Placenta
10	chr8:121166800-121168400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:121166800-121176000	Weak transcription	Ovary	ovary
12	chr8:121166800-121176800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:121167000-121172000	Weak transcription	Fetal Intestine Large	intestine
14	chr8:121167000-121178000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:121167800-121173200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:121168000-121170400	Weak transcription	Fetal Lung	lung
17	chr8:121168200-121169200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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