Variant report

Variant	rs7840679
Chromosome Location	chr8:119971754-119971755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:56985438..56987171-chr8:119969478..119971967,2	MCF-7	breast:
2	chr8:119961719..119966246-chr8:119966931..119971786,6	MCF-7	breast:
3	chr8:119963555..119965491-chr8:119971037..119973280,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238650	Chromatin interaction
ENSG00000008988	Chromatin interaction
ENSG00000164761	Chromatin interaction
ENSG00000253603	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11573806	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11573808	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs11573812	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs11573813	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs11573852	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11573900	0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11573902	1.00[YRI][hapmap]
rs16891771	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs16891776	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7833877	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758169	chr8:119943309-120275750	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2759639	chr8:119943309-120275750	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119964800-119971800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:119965000-119973800	Weak transcription	Pancreas	Pancrea
3	chr8:119965200-119973000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:119965200-119973800	Weak transcription	NHLF	lung
5	chr8:119967600-119975400	Enhancers	Hela-S3	cervix
6	chr8:119969800-119972600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:119970600-119971800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:119970600-119972000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:119970600-119972600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:119970800-119972000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr8:119970800-119972200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr8:119970800-119972200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:119970800-119972200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr8:119970800-119972400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:119970800-119972400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:119970800-119972400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:119970800-119972600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr8:119971000-119972200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr8:119971200-119972200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr8:119971400-119973600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:119971600-119971800	Enhancers	Primary hematopoietic stem cells	blood
22	chr8:119971600-119972200	Enhancers	GM12878-XiMat	blood
23	chr8:119971600-119973800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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