Variant report

Variant	rs7840831
Chromosome Location	chr8:121666242-121666243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121665347..121667970-chr8:121670841..121672355,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56368196	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58992112	0.87[ASN][1000 genomes]
rs6995376	0.96[ASN][1000 genomes]
rs72609833	0.88[ASN][1000 genomes]
rs7822135	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6369	chr8:121654665-121699920	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121613200-121668000	Weak transcription	Pancreas	Pancrea
2	chr8:121628600-121673200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr8:121644200-121666800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:121644800-121674800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr8:121645000-121666400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:121645000-121673000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr8:121646400-121666800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr8:121655400-121666400	Weak transcription	HSMM	muscle
9	chr8:121655600-121666400	Weak transcription	HSMMtube	muscle
10	chr8:121655800-121673000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr8:121658600-121678600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr8:121660800-121666400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr8:121662200-121668200	Strong transcription	HepG2	liver
14	chr8:121662200-121675000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:121662400-121668400	Strong transcription	Liver	Liver
16	chr8:121662400-121673400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:121662800-121680000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr8:121663000-121681200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr8:121663200-121672400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr8:121663600-121669200	Weak transcription	Primary T cells from cord blood	blood
21	chr8:121663600-121685000	Weak transcription	Aorta	Aorta
22	chr8:121663800-121668600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr8:121664000-121666600	Enhancers	Fetal Lung	lung
24	chr8:121664200-121669000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:121664200-121671800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr8:121664400-121666400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:121664400-121666400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:121664400-121666400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:121664400-121668000	Enhancers	NHLF	lung
30	chr8:121664400-121669600	Enhancers	NHDF-Ad	bronchial
31	chr8:121664400-121670000	Enhancers	Osteobl	bone
32	chr8:121665000-121666800	Enhancers	Psoas Muscle	Psoas
33	chr8:121665200-121666400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr8:121665200-121666400	Enhancers	Colon Smooth Muscle	Colon
35	chr8:121665200-121667200	Enhancers	Fetal Muscle Leg	muscle
36	chr8:121665400-121667200	Enhancers	Fetal Brain Male	brain
37	chr8:121665600-121666600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr8:121665600-121666600	Enhancers	Ovary	ovary
39	chr8:121665600-121667400	Enhancers	Fetal Stomach	stomach
40	chr8:121665600-121668000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr8:121665800-121666800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr8:121665800-121666800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr8:121665800-121668000	Weak transcription	Primary B cells from cord blood	blood
44	chr8:121665800-121679400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr8:121666000-121666400	Enhancers	Fetal Muscle Trunk	muscle
46	chr8:121666200-121666400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr8:121666200-121666600	Enhancers	Fetal Kidney	kidney

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