Variant report

Variant	rs7841614
Chromosome Location	chr8:39895457-39895458
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12546660	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16888662	0.81[ASN][1000 genomes]
rs1842539	0.81[ASN][1000 genomes]
rs28459897	0.84[ASN][1000 genomes]
rs2955868	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6474211	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6993749	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39891400-39896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:39891400-39898400	Weak transcription	Pancreas	Pancrea
3	chr8:39892600-39896800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:39892600-39896800	Weak transcription	Fetal Lung	lung
5	chr8:39892600-39897800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:39892600-39898200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:39893600-39898400	Weak transcription	Liver	Liver
8	chr8:39893600-39898400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:39893800-39897600	Weak transcription	HepG2	liver
10	chr8:39894200-39897800	Weak transcription	Colon Smooth Muscle	Colon
11	chr8:39894400-39897800	Weak transcription	Hela-S3	cervix
12	chr8:39895000-39895600	Enhancers	Fetal Intestine Large	intestine
13	chr8:39895000-39900000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:39895200-39895600	Genic enhancers	A549	lung
15	chr8:39895200-39896200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:39895200-39896200	Enhancers	HUVEC	blood vessel
17	chr8:39895200-39896400	Enhancers	Fetal Intestine Small	intestine
18	chr8:39895200-39896400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr8:39895400-39895800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr8:39895400-39895800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr8:39895400-39895800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr8:39895400-39896000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:39895400-39896000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr8:39895400-39896000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr8:39895400-39896200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:39895400-39899600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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