Variant report

Variant	rs7842152
Chromosome Location	chr8:103715303-103715304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103664274..103669352-chr8:103706016..103716856,15	MCF-7	breast:
2	chr8:103713129..103715876-chr8:103818005..103819784,2	MCF-7	breast:
3	chr8:103612224..103613922-chr8:103713851..103716447,2	MCF-7	breast:
4	chr8:103710311..103712892-chr8:103713398..103715584,2	K562	blood:
5	chr8:103709537..103712892-chr8:103713255..103715584,4	K562	blood:
6	chr8:103713306..103716801-chr8:103817388..103820104,3	K562	blood:
7	chr8:103714100..103716256-chr8:103738928..103741282,2	MCF-7	breast:
8	chr8:103713778..103716086-chr8:103819862..103822357,3	MCF-7	breast:
9	chr8:103663808..103666386-chr8:103714227..103715917,2	K562	blood:
10	chr8:103714554..103716653-chr8:103768887..103770568,2	MCF-7	breast:
11	chr8:103669378..103671910-chr8:103714543..103716720,2	MCF-7	breast:
12	chr8:103714684..103716234-chr8:103723186..103724695,2	MCF-7	breast:
13	chr8:103710324..103712575-chr8:103713030..103715974,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11552577	1.00[ASW][hapmap]
rs11779840	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1026755	chr8:103676970-103728556	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018625	chr8:103676970-103729197	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103711600-103718600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:103713200-103733600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:103714000-103715600	Enhancers	NHEK	skin
4	chr8:103714400-103715400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:103714400-103715400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:103714400-103715400	Enhancers	Osteobl	bone
7	chr8:103714400-103715600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:103714400-103715600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:103714600-103715400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:103714600-103715400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:103714600-103715600	Enhancers	Stomach Mucosa	stomach
12	chr8:103714800-103716000	Weak transcription	Fetal Stomach	stomach
13	chr8:103715200-103715400	Flanking Active TSS	Hela-S3	cervix
14	chr8:103715200-103718600	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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