Variant report

Variant	rs7842857
Chromosome Location	chr8:131920451-131920452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10098645	0.85[EUR][1000 genomes]
rs10956557	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11779887	0.85[EUR][1000 genomes]
rs11780690	0.87[EUR][1000 genomes]
rs11782328	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12155610	0.87[EUR][1000 genomes]
rs13248582	0.81[ASN][1000 genomes]
rs13257796	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13261396	0.87[EUR][1000 genomes]
rs1369451	0.85[EUR][1000 genomes]
rs17248206	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17326441	0.86[EUR][1000 genomes]
rs2014815	0.85[EUR][1000 genomes]
rs28536655	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34950289	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35981604	0.85[EUR][1000 genomes]
rs56293105	0.87[EUR][1000 genomes]
rs6415523	0.81[ASN][1000 genomes]
rs72714450	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72714455	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7460331	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7843127	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612294	chr8:131645079-131923377	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891448	chr8:131668278-131968469	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1034107	chr8:131740146-131985765	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv539747	chr8:131740146-131985765	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131913600-131920800	Enhancers	NHDF-Ad	bronchial
2	chr8:131914400-131920600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:131915200-131921200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:131915400-131920600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:131915800-131920800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:131917600-131933600	Weak transcription	Brain Angular Gyrus	brain
7	chr8:131917800-131921400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr8:131917800-131923400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:131918800-131920600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:131919200-131921200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:131919400-131920800	Enhancers	HUVEC	blood vessel
12	chr8:131919800-131921200	Enhancers	NHEK	skin
13	chr8:131920200-131921400	Weak transcription	HSMMtube	muscle
14	chr8:131920200-131925600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr8:131920400-131920800	Enhancers	Fetal Brain Male	brain
16	chr8:131920400-131925800	Weak transcription	HSMM	muscle

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