Variant report

Variant	rs7842943
Chromosome Location	chr8:89262527-89262528
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10100297	0.80[EUR][1000 genomes]
rs11777424	0.82[AFR][1000 genomes]
rs1394514	0.89[CEU][hapmap]
rs1401864	0.84[EUR][1000 genomes]
rs1504804	0.89[CEU][hapmap]
rs17666490	0.81[AFR][1000 genomes]
rs1879202	0.81[EUR][1000 genomes]
rs1915024	0.81[EUR][1000 genomes]
rs34725691	0.83[AMR][1000 genomes]
rs4147332	0.85[EUR][1000 genomes]
rs4246112	0.89[CEU][hapmap]
rs4246113	0.89[CEU][hapmap]
rs4463475	0.81[EUR][1000 genomes]
rs4515601	0.89[CEU][hapmap]
rs4961087	0.89[CEU][hapmap]
rs6994019	0.82[AMR][1000 genomes]
rs7010876	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891170	chr8:89227970-89298199	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89252600-89264400	Weak transcription	Fetal Heart	heart
2	chr8:89256800-89264400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:89257400-89275400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:89261000-89270200	Weak transcription	Aorta	Aorta
5	chr8:89261600-89262800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr8:89262000-89266600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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