Variant report

Variant	rs7843186
Chromosome Location	chr8:54224044-54224045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10100335	0.81[ASN][1000 genomes]
rs10958354	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59043999	0.81[ASN][1000 genomes]
rs62505430	0.81[ASN][1000 genomes]
rs6473811	0.81[ASN][1000 genomes]
rs6473812	0.81[ASN][1000 genomes]
rs6473813	0.81[ASN][1000 genomes]
rs6473822	0.84[JPT][hapmap]
rs6981962	0.81[ASN][1000 genomes]
rs6985500	0.81[ASN][1000 genomes]
rs6986486	0.81[ASN][1000 genomes]
rs6998372	0.81[ASN][1000 genomes]
rs7004141	0.81[ASN][1000 genomes]
rs7006592	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs73588586	0.81[ASN][1000 genomes]
rs73588587	0.81[ASN][1000 genomes]
rs7462603	0.81[ASN][1000 genomes]
rs9720873	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016224	chr8:53719941-54367534	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv530534	chr8:53787984-54367353	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3377304	chr8:53873441-54380875	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54222600-54224200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr8:54222800-54224200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:54222800-54224200	Enhancers	NHEK	skin
4	chr8:54223000-54226000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:54223000-54226400	Enhancers	Brain Germinal Matrix	brain
6	chr8:54223400-54229400	Weak transcription	HMEC	breast
7	chr8:54223600-54229400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:54224000-54224200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:54224000-54224200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:54224000-54224200	Enhancers	Fetal Muscle Leg	muscle
11	chr8:54224000-54225000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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