Variant report

Variant	rs7843934
Chromosome Location	chr8:10960506-10960507
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10106914	1.00[JPT][hapmap]
rs10503416	1.00[JPT][hapmap]
rs11984728	0.88[ASN][1000 genomes]
rs11984987	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11986294	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2409712	1.00[JPT][hapmap]
rs28688244	0.83[ASN][1000 genomes]
rs28712616	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4333549	1.00[JPT][hapmap]
rs4841498	1.00[JPT][hapmap]
rs4841500	1.00[JPT][hapmap]
rs4841504	1.00[JPT][hapmap]
rs6651507	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7829396	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025426	chr8:10942929-11037903	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1026331	chr8:10955941-11046394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1027845	chr8:10959666-10995565	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10950600-10965000	Weak transcription	Gastric	stomach
2	chr8:10955200-10968000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:10956800-10964800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:10957200-10964800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:10958200-10965000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr8:10958200-10967200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr8:10958200-10970200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:10958400-10965200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:10958400-10974800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:10958600-10964800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr8:10958600-10965000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr8:10958600-10971200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:10958600-10971200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr8:10958800-10967400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr8:10959600-10964800	Weak transcription	Pancreas	Pancrea
16	chr8:10960400-10963800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:10960400-10967000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:10960400-10968400	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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