Variant report

Variant	rs7844006
Chromosome Location	chr8:59778478-59778479
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11995430	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16918743	1.00[EUR][1000 genomes]
rs16924088	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2166923	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59764200-59806400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:59771600-59794000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr8:59772600-59794400	Weak transcription	Small Intestine	intestine
5	chr8:59773400-59808200	Weak transcription	Thymus	Thymus
6	chr8:59773800-59785000	Weak transcription	Dnd41	blood
7	chr8:59774000-59781000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:59774200-59779800	Weak transcription	Fetal Thymus	thymus
9	chr8:59774600-59789600	Weak transcription	Primary T cells from cord blood	blood
10	chr8:59776600-59779000	Weak transcription	Brain Germinal Matrix	brain
11	chr8:59777400-59778800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr8:59777400-59779200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:59777400-59779400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr8:59777800-59778800	Weak transcription	NH-A	brain
15	chr8:59777800-59779000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr8:59777800-59779800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:59777800-59779800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:59777800-59780000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:59777800-59780000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:59777800-59780000	Weak transcription	NHLF	lung
21	chr8:59777800-59780400	Enhancers	HSMM	muscle
22	chr8:59777800-59780600	Enhancers	Osteobl	bone
23	chr8:59777800-59780800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr8:59777800-59788200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr8:59777800-59795000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr8:59778000-59779000	Weak transcription	Colon Smooth Muscle	Colon
27	chr8:59778000-59779400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr8:59778000-59779400	Enhancers	HUVEC	blood vessel
29	chr8:59778000-59779800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr8:59778000-59780000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr8:59778000-59780400	Enhancers	NHDF-Ad	bronchial
32	chr8:59778200-59783200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr8:59778200-59789000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:59778400-59778800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:59778400-59779000	Enhancers	HSMMtube	muscle

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