Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:69671516..69674416-chr8:69676691..69679997,3	MCF-7	breast:
2	chr8:69666329..69668824-chr8:69675857..69677565,2	K562	blood:
3	chr8:69670378..69672339-chr8:69676760..69679321,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10096688	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10957446	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs11987041	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs16935014	0.81[EUR][1000 genomes]
rs4299986	0.95[CEU][hapmap]
rs4336597	0.95[CEU][hapmap]
rs4336598	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4351405	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4484685	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs6472419	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs6472420	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs67673719	0.81[EUR][1000 genomes]
rs67892878	0.81[EUR][1000 genomes]
rs6990164	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs719689	0.95[CEU][hapmap]
rs72668527	0.81[EUR][1000 genomes]
rs73277905	0.81[EUR][1000 genomes]
rs73277906	0.81[EUR][1000 genomes]
rs7821966	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs7822083	0.81[EUR][1000 genomes]
rs7822136	0.90[CEU][hapmap]
rs7822340	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs7826665	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs7826725	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs7826997	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs7839911	0.95[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv890986	chr8:69647914-69704366	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7845019	VCPIP1	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69673200-69679800	Weak transcription	HUVEC	blood vessel
2	chr8:69673600-69678200	Weak transcription	HMEC	breast
3	chr8:69673800-69679800	Weak transcription	Osteobl	bone
4	chr8:69673800-69682000	Weak transcription	HSMMtube	muscle
5	chr8:69674400-69679800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:69674400-69679800	Weak transcription	NHLF	lung
7	chr8:69674800-69682000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:69675200-69686200	Weak transcription	Fetal Lung	lung
9	chr8:69676200-69677000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:69676200-69681000	Enhancers	Hela-S3	cervix
11	chr8:69676400-69677000	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr8:69676600-69677000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr8:69676600-69677000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:69676600-69677000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:69676600-69677000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr8:69676600-69677000	Enhancers	HSMM	muscle
17	chr8:69676600-69677200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr8:69676600-69677600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr8:69676800-69677000	Enhancers	Aorta	Aorta
20	chr8:69676800-69677200	Enhancers	HUES6 Cell Line	embryonic stem cell

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