Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:109884394..109886026-chr9:109931594..109934408,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226535	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10119496	0.90[EUR][1000 genomes]
rs11573650	1.00[YRI][hapmap]
rs1518391	0.90[EUR][1000 genomes]
rs1713666	0.90[EUR][1000 genomes]
rs1996499	0.90[EUR][1000 genomes]
rs6477556	0.88[EUR][1000 genomes]
rs696562	0.83[EUR][1000 genomes]
rs698468	0.88[EUR][1000 genomes]
rs698470	0.90[EUR][1000 genomes]
rs784644	0.90[EUR][1000 genomes]
rs784650	0.88[EUR][1000 genomes]
rs784652	0.90[EUR][1000 genomes]
rs784660	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs784664	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs784788	0.88[EUR][1000 genomes]
rs784789	0.88[EUR][1000 genomes]
rs784790	0.88[EUR][1000 genomes]
rs784791	0.82[EUR][1000 genomes]
rs784792	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs784794	0.90[EUR][1000 genomes]
rs813671	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:109885200-109886400	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr9:109885600-109886600	Enhancers	Skeletal Muscle Male	skeletal muscle

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