Variant report

Variant	rs7847610
Chromosome Location	chr9:117926329-117926330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10982546	0.80[ASN][1000 genomes]
rs1335334	0.80[ASN][1000 genomes]
rs1414138	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1537721	0.83[ASN][1000 genomes]
rs1537727	0.83[ASN][1000 genomes]
rs1537728	0.83[ASN][1000 genomes]
rs2094941	0.83[ASN][1000 genomes]
rs2992148	0.83[ASN][1000 genomes]
rs4246907	0.81[ASN][1000 genomes]
rs4978618	0.83[ASN][1000 genomes]
rs4979508	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7470092	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs884789	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv6681	chr9:117893926-117938609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117920600-117926400	Weak transcription	NHEK	skin
2	chr9:117921400-117926600	Weak transcription	HSMMtube	muscle
3	chr9:117921600-117926400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:117921600-117926600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:117921600-117926800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:117921800-117926800	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:117922000-117944600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:117923400-117927600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:117924000-117926400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:117924200-117926600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:117924600-117926800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:117925400-117927400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:117925400-117928000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr9:117925600-117926600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:117925600-117927800	Enhancers	HSMM	muscle
16	chr9:117925800-117927400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr9:117925800-117927400	Enhancers	Dnd41	blood
18	chr9:117925800-117927600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:117925800-117927600	Enhancers	NHLF	lung
20	chr9:117925800-117927800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:117925800-117928000	Enhancers	Brain Germinal Matrix	brain
22	chr9:117925800-117928200	Enhancers	NHDF-Ad	bronchial
23	chr9:117926000-117926400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:117926000-117926400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:117926000-117926600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links