Variant report

Variant	rs7848085
Chromosome Location	chr9:102858572-102858573
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr9:102858413-102859348	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:102848663..102851560-chr9:102857671..102859927,2	K562	blood:
2	chr9:102848064..102853071-chr9:102854113..102861263,11	K562	blood:
3	chr9:102855069..102859184-chr9:102859337..102862502,5	MCF-7	breast:

Variant related genes	Relation type
INVS	TF binding region
ENSG00000119509	Chromatin interaction
ENSG00000023318	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7862162	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102800000-102860200	Weak transcription	Esophagus	oesophagus
2	chr9:102836000-102859000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:102837000-102859600	Weak transcription	Brain Anterior Caudate	brain
4	chr9:102837200-102860200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr9:102839600-102860000	Weak transcription	Fetal Stomach	stomach
6	chr9:102839800-102860200	Weak transcription	Right Atrium	heart
7	chr9:102846000-102860000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:102846400-102859600	Weak transcription	NHLF	lung
9	chr9:102846400-102860000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:102846600-102860000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:102846600-102860200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr9:102847200-102859800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr9:102847200-102860000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr9:102849000-102858800	Weak transcription	Hela-S3	cervix
15	chr9:102849800-102859200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:102850400-102858800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr9:102850600-102858800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr9:102850600-102860200	Weak transcription	HSMM	muscle
19	chr9:102850800-102858800	Weak transcription	Dnd41	blood
20	chr9:102850800-102860000	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr9:102851000-102859800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:102851000-102859800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr9:102851000-102860000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr9:102851400-102858800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr9:102851600-102859000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:102851600-102859600	Weak transcription	NHEK	skin
27	chr9:102851800-102860200	Weak transcription	Psoas Muscle	Psoas
28	chr9:102852400-102858600	Weak transcription	Fetal Intestine Large	intestine
29	chr9:102852600-102858800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:102852600-102859000	Weak transcription	Fetal Lung	lung
31	chr9:102852600-102859800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:102852800-102859200	Weak transcription	Adipose Nuclei	Adipose
33	chr9:102854600-102859800	Weak transcription	Fetal Heart	heart
34	chr9:102855000-102859400	Weak transcription	Brain Hippocampus Middle	brain
35	chr9:102855200-102860400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr9:102855400-102860200	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr9:102855800-102860200	Enhancers	Liver	Liver
38	chr9:102856000-102859600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr9:102856000-102860000	Enhancers	Primary T cells from cord blood	blood
40	chr9:102856000-102860200	Weak transcription	Aorta	Aorta
41	chr9:102856000-102860200	Weak transcription	Gastric	stomach
42	chr9:102856000-102860200	Weak transcription	Left Ventricle	heart
43	chr9:102856000-102860200	Weak transcription	Lung	lung
44	chr9:102856000-102860200	Weak transcription	Pancreas	Pancrea
45	chr9:102856000-102860400	Weak transcription	Spleen	Spleen
46	chr9:102856200-102859600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr9:102856200-102859600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr9:102856400-102858800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr9:102856400-102859000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr9:102856400-102859000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links