Variant report

Variant	rs7850633
Chromosome Location	chr9:86086600-86086601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86077262..86080210-chr9:86086531..86088132,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2375928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2375929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860934	0.86[GIH][hapmap];0.85[TSI][hapmap]
rs7034871	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873385	0.80[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7850633	SLC28A3	cis	cerebellum	SCAN
rs7850633	FRMD3	cis	cerebellum	SCAN

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86074600-86093200	Weak transcription	Pancreas	Pancrea
2	chr9:86084000-86086600	Enhancers	Fetal Muscle Leg	muscle
3	chr9:86084000-86088000	Weak transcription	Lung	lung
4	chr9:86084600-86088000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:86084800-86087000	Enhancers	Hela-S3	cervix
6	chr9:86084800-86087400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr9:86085000-86090800	Enhancers	HepG2	liver
8	chr9:86085200-86087000	Enhancers	Psoas Muscle	Psoas
9	chr9:86085200-86087800	Enhancers	Adipose Nuclei	Adipose
10	chr9:86085200-86088200	Enhancers	NHDF-Ad	bronchial
11	chr9:86085400-86087600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:86085400-86088200	Enhancers	Fetal Intestine Large	intestine
13	chr9:86085400-86088800	Enhancers	Left Ventricle	heart
14	chr9:86085600-86086800	Weak transcription	HSMM	muscle
15	chr9:86085800-86088000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr9:86086000-86088000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr9:86086000-86088800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr9:86086000-86089000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:86086000-86089400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr9:86086000-86090000	Enhancers	Stomach Mucosa	stomach
21	chr9:86086200-86087000	Enhancers	Brain Cingulate Gyrus	brain
22	chr9:86086200-86087200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:86086200-86087200	Enhancers	Placenta	Placenta
24	chr9:86086200-86087200	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr9:86086200-86088800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:86086400-86086600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr9:86086400-86087200	Enhancers	Right Ventricle	heart
28	chr9:86086400-86087400	Enhancers	Duodenum Mucosa	Duodenum
29	chr9:86086400-86087600	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr9:86086400-86087800	Enhancers	GM12878-XiMat	blood
31	chr9:86086400-86088000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr9:86086400-86088000	Weak transcription	Ovary	ovary
33	chr9:86086400-86088400	Enhancers	Primary B cells from cord blood	blood
34	chr9:86086400-86088800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr9:86086400-86089800	Enhancers	Right Atrium	heart
36	chr9:86086600-86087200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr9:86086600-86087200	Enhancers	A549	lung
38	chr9:86086600-86087400	Weak transcription	Fetal Muscle Leg	muscle
39	chr9:86086600-86088200	Enhancers	Primary B cells from peripheral blood	blood
40	chr9:86086600-86088800	Enhancers	NH-A	brain
41	chr9:86086600-86090000	Enhancers	Fetal Intestine Small	intestine

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