Variant report

Variant	rs7850846
Chromosome Location	chr9:117472937-117472938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11999346	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12005760	1.00[EUR][1000 genomes]
rs16930568	1.00[EUR][1000 genomes]
rs16930654	1.00[EUR][1000 genomes]
rs60476355	1.00[EUR][1000 genomes]
rs61519414	1.00[EUR][1000 genomes]
rs73656160	1.00[EUR][1000 genomes]
rs73656161	1.00[EUR][1000 genomes]
rs73656162	1.00[EUR][1000 genomes]
rs73656191	1.00[EUR][1000 genomes]
rs73656192	1.00[EUR][1000 genomes]
rs73656193	1.00[EUR][1000 genomes]
rs73656194	1.00[EUR][1000 genomes]
rs7849811	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7859926	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042718	chr9:117435306-117488969	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117471600-117473200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr9:117471800-117473200	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr9:117472000-117480400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:117472400-117477800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:117472600-117478400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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