Variant report

Variant	rs78521590
Chromosome Location	chr6:121850941-121850942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv1847344	chr6:121845356-121875648	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1844166	chr6:121845356-121880939	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3473265	chr6:121849872-121852057	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3473267	chr6:121849928-121852002	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3473266	chr6:121849980-121851921	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3473268	chr6:121849994-121851921	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121845400-121854200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:121847000-121851000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:121848200-121853000	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:121850800-121851200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:121850800-121851200	Enhancers	Osteobl	bone
6	chr6:121850800-121854000	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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