Variant report

Variant	rs7852665
Chromosome Location	chr9:16191094-16191095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16934210	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16934222	0.84[ASN][1000 genomes]
rs73648621	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16179800-16192000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:16185200-16193600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:16185600-16192200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:16185600-16196400	Weak transcription	Aorta	Aorta
5	chr9:16187800-16191400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:16189800-16192000	Weak transcription	Primary T cells from cord blood	blood
7	chr9:16190000-16191200	Weak transcription	HSMMtube	muscle
8	chr9:16190000-16193000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:16190600-16192000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:16190600-16193600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:16190600-16193800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:16190800-16191400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:16190800-16192000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:16190800-16193000	Enhancers	Colon Smooth Muscle	Colon
15	chr9:16190800-16193400	Enhancers	Fetal Stomach	stomach
16	chr9:16190800-16193600	Enhancers	NHDF-Ad	bronchial
17	chr9:16190800-16193800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:16190800-16194000	Enhancers	NH-A	brain
19	chr9:16190800-16194400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:16191000-16191400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:16191000-16191400	Enhancers	A549	lung
22	chr9:16191000-16191600	Enhancers	Osteobl	bone
23	chr9:16191000-16191800	Enhancers	Placenta Amnion	Placenta Amnion
24	chr9:16191000-16193200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:16191000-16193600	Enhancers	HSMM	muscle
26	chr9:16191000-16193600	Enhancers	NHLF	lung
27	chr9:16191000-16194200	Enhancers	Fetal Muscle Leg	muscle

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