Variant report
Variant | rs7853142 |
---|---|
Chromosome Location | chr9:2991182-2991183 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
ENSG00000236511 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10119404 | 0.87[EUR][1000 genomes] |
rs10283729 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10969009 | 1.00[CHB][hapmap] |
rs10969226 | 0.80[EUR][1000 genomes] |
rs10969227 | 0.86[EUR][1000 genomes] |
rs10969236 | 0.80[EUR][1000 genomes] |
rs10969374 | 1.00[ASN][1000 genomes] |
rs10969468 | 0.93[EUR][1000 genomes] |
rs10969469 | 0.87[EUR][1000 genomes] |
rs10969483 | 0.87[EUR][1000 genomes] |
rs10969488 | 0.87[EUR][1000 genomes] |
rs12335591 | 0.80[EUR][1000 genomes] |
rs12338836 | 0.80[EUR][1000 genomes] |
rs12340058 | 0.87[EUR][1000 genomes] |
rs12342511 | 0.87[EUR][1000 genomes] |
rs12348135 | 0.80[EUR][1000 genomes] |
rs12352961 | 0.80[EUR][1000 genomes] |
rs28437515 | 1.00[ASN][1000 genomes] |
rs28443183 | 1.00[ASN][1000 genomes] |
rs28578824 | 1.00[ASN][1000 genomes] |
rs28579190 | 1.00[ASN][1000 genomes] |
rs3858037 | 1.00[ASN][1000 genomes] |
rs59060942 | 0.87[EUR][1000 genomes] |
rs59086077 | 0.93[EUR][1000 genomes] |
rs60746952 | 0.93[EUR][1000 genomes] |
rs73385384 | 0.93[EUR][1000 genomes] |
rs73387545 | 0.93[EUR][1000 genomes] |
rs73387547 | 0.93[EUR][1000 genomes] |
rs7863786 | 0.80[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1017581 | chr9:2494815-3172020 | Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
2 | nsv539934 | chr9:2494815-3172020 | Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
3 | nsv1024262 | chr9:2703159-3067931 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
4 | nsv1018636 | chr9:2921825-3002862 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
5 | nsv892085 | chr9:2937654-3215842 | Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |