Variant report

Variant	rs7853148
Chromosome Location	chr9:16921847-16921848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1001301	0.95[EUR][1000 genomes]
rs10119682	0.86[AFR][1000 genomes]
rs10120433	0.89[ASN][1000 genomes]
rs10756839	0.90[ASN][1000 genomes]
rs10810674	0.96[ASN][1000 genomes]
rs10810676	0.83[EUR][1000 genomes]
rs10810677	0.96[ASN][1000 genomes]
rs10810683	0.82[EUR][1000 genomes]
rs10962696	0.94[EUR][1000 genomes]
rs10962697	0.95[EUR][1000 genomes]
rs10962717	0.82[EUR][1000 genomes]
rs10962718	0.82[EUR][1000 genomes]
rs11791869	0.95[EUR][1000 genomes]
rs12349018	0.86[AFR][1000 genomes]
rs12682753	0.87[ASN][1000 genomes]
rs4961506	0.88[ASN][1000 genomes]
rs6475097	0.88[ASN][1000 genomes]
rs7341731	0.88[ASN][1000 genomes]
rs7848662	0.87[ASN][1000 genomes]
rs7860428	0.87[ASN][1000 genomes]
rs9298767	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892652	chr9:16843128-16958312	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv1018615	chr9:16865804-16960970	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv540074	chr9:16865804-16960970	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv892654	chr9:16898603-16941006	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
7	esv3693021	chr9:16903446-16929803	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv466266	chr9:16903446-16950860	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
9	nsv471286	chr9:16903446-16950860	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv613686	chr9:16903446-16950860	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1030297	chr9:16913777-16931807	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv1021873	chr9:16914412-16931807	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
14	nsv526253	chr9:16921847-16933037	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7853148	CNTLN	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16912800-16928000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:16915800-16923600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:16915800-16928200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:16921600-16922000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:16921600-16922200	Enhancers	NHDF-Ad	bronchial
6	chr9:16921600-16922800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:16921600-16923800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:16921800-16922000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr9:16921800-16922000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
10	chr9:16921800-16922200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr9:16921800-16922200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:16921800-16922200	Enhancers	A549	lung
13	chr9:16921800-16922200	Enhancers	NHEK	skin
14	chr9:16921800-16922200	Enhancers	Osteobl	bone
15	chr9:16921800-16922400	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links