Variant report

Variant	rs7853512
Chromosome Location	chr9:71174667-71174668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71122335..71122837-chr9:71174540..71175279,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10125634	1.00[CEU][hapmap]
rs10746880	1.00[EUR][1000 genomes]
rs1389032	1.00[CEU][hapmap]
rs1532235	1.00[CEU][hapmap]
rs57111106	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57637415	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58674993	0.87[AMR][1000 genomes]
rs59022171	0.87[AMR][1000 genomes]
rs60396748	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7027250	1.00[CEU][hapmap]
rs7028925	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs7038473	0.87[AMR][1000 genomes]
rs7038839	0.87[AMR][1000 genomes]
rs7045327	1.00[CEU][hapmap]
rs7848245	1.00[CEU][hapmap]
rs7854021	1.00[CEU][hapmap]
rs7862924	1.00[CEU][hapmap]
rs7867443	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893413	chr9:71130848-71196984	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893411	chr9:71130848-71199545	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv893412	chr9:71130848-71199545	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1024967	chr9:71130848-71210031	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv482506	chr9:71130848-71280888	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv466392	chr9:71130848-71318817	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv614546	chr9:71130848-71318817	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	nsv893414	chr9:71139378-71320732	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71162200-71174800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:71162200-71175000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:71169600-71174800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:71169600-71175000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:71170000-71175000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:71170200-71174800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr9:71170400-71175200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:71171000-71175000	Weak transcription	Lung	lung
9	chr9:71171200-71174800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:71171200-71175000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:71171200-71175200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:71171400-71174800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:71173000-71176200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:71173200-71176200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr9:71173200-71177600	Enhancers	Primary hematopoietic stem cells	blood
16	chr9:71173400-71175000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr9:71173400-71175600	Weak transcription	Right Ventricle	heart
18	chr9:71173600-71175800	Enhancers	Left Ventricle	heart
19	chr9:71173600-71175800	Enhancers	Right Atrium	heart
20	chr9:71173800-71176200	Enhancers	Colon Smooth Muscle	Colon
21	chr9:71174000-71175800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:71174000-71175800	Enhancers	Spleen	Spleen
23	chr9:71174200-71176200	Enhancers	Fetal Kidney	kidney
24	chr9:71174200-71181600	Weak transcription	Gastric	stomach
25	chr9:71174400-71175000	Enhancers	NHLF	lung
26	chr9:71174400-71175400	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr9:71174400-71175800	Enhancers	Stomach Mucosa	stomach
28	chr9:71174600-71174800	Enhancers	Fetal Heart	heart
29	chr9:71174600-71175000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr9:71174600-71175800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr9:71174600-71175800	Enhancers	Primary B cells from peripheral blood	blood
32	chr9:71174600-71175800	Enhancers	Fetal Muscle Leg	muscle
33	chr9:71174600-71176400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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