Variant report

Variant	rs78537796
Chromosome Location	chr5:177783207-177783208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
4	nsv1021981	chr5:177620372-177825272	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
5	nsv537967	chr5:177620372-177825272	Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
6	nsv1024689	chr5:177638936-177926244	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv537968	chr5:177638936-177926244	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv883206	chr5:177684682-177796121	Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1027165	chr5:177693601-177843314	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv427739	chr5:177766033-177966666	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv883210	chr5:177771925-177980792	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	esv3327480	chr5:177782846-177787744	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177759400-177783400	Weak transcription	Right Atrium	heart
2	chr5:177776200-177783400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:177778400-177783400	Weak transcription	NHDF-Ad	bronchial
4	chr5:177779200-177783400	Weak transcription	Thymus	Thymus
5	chr5:177781800-177783600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:177782200-177784200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr5:177782600-177784600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr5:177782800-177783400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:177782800-177783600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr5:177782800-177783600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:177782800-177783600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:177782800-177784800	Enhancers	Fetal Lung	lung
13	chr5:177783000-177783400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:177783000-177783400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr5:177783000-177783400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:177783000-177783400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr5:177783000-177783400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr5:177783000-177783400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:177783000-177783400	Enhancers	Brain Cingulate Gyrus	brain
20	chr5:177783000-177783400	Enhancers	Brain Hippocampus Middle	brain
21	chr5:177783000-177783400	Bivalent Enhancer	Fetal Stomach	stomach
22	chr5:177783000-177783400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
23	chr5:177783000-177783600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:177783000-177783600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr5:177783000-177783600	Enhancers	Placenta	Placenta
26	chr5:177783000-177783600	Enhancers	Psoas Muscle	Psoas
27	chr5:177783000-177784200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:177783000-177784200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:177783000-177784400	Flanking Active TSS	Brain Substantia Nigra	brain
30	chr5:177783000-177784400	Enhancers	Lung	lung
31	chr5:177783000-177784400	Enhancers	Pancreas	Pancrea
32	chr5:177783000-177784400	Enhancers	Spleen	Spleen
33	chr5:177783000-177784600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr5:177783000-177784600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr5:177783000-177784600	Bivalent Enhancer	Fetal Muscle Leg	muscle
36	chr5:177783000-177784800	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr5:177783000-177785200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr5:177783000-177785600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:177783000-177785600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr5:177783200-177783400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr5:177783200-177783400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr5:177783200-177783400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr5:177783200-177783400	Enhancers	Brain Anterior Caudate	brain
44	chr5:177783200-177783400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr5:177783200-177783400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
46	chr5:177783200-177783400	Bivalent Enhancer	Fetal Brain Male	brain
47	chr5:177783200-177783400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
48	chr5:177783200-177783600	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr5:177783200-177783600	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr5:177783200-177783600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links