Variant report

Variant	rs7854962
Chromosome Location	chr9:96900505-96900506
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96899589..96905668-chr9:96926948..96930471,6	MCF-7	breast:
2	chr9:96899950..96905236-chr9:96927673..96930558,7	K562	blood:
3	chr9:96897901..96900583-chr9:96900946..96903604,5	MCF-7	breast:
4	chr9:96899950..96904180-chr9:96926741..96930558,5	K562	blood:
5	chr9:96899016..96906502-chr9:96926750..96931118,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269946	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10761318	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10821302	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821303	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821304	0.82[EUR][1000 genomes]
rs55990139	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7866254	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96896400-96902400	Enhancers	HMEC	breast
2	chr9:96896800-96901800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:96896800-96902200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:96897000-96900800	Weak transcription	Right Atrium	heart
5	chr9:96897200-96900800	Weak transcription	Esophagus	oesophagus
6	chr9:96897200-96900800	Weak transcription	Left Ventricle	heart
7	chr9:96897200-96900800	Weak transcription	Lung	lung
8	chr9:96897200-96902400	Weak transcription	Ovary	ovary
9	chr9:96897200-96902400	Weak transcription	Right Ventricle	heart
10	chr9:96897400-96900800	Weak transcription	Aorta	Aorta
11	chr9:96897400-96900800	Weak transcription	Psoas Muscle	Psoas
12	chr9:96897600-96902400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:96897800-96901400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr9:96897800-96901400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:96897800-96902400	Weak transcription	Gastric	stomach
16	chr9:96897800-96902600	Weak transcription	Small Intestine	intestine
17	chr9:96898000-96900800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:96898000-96900800	Weak transcription	Adipose Nuclei	Adipose
19	chr9:96898000-96901400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr9:96898000-96901400	Weak transcription	Fetal Stomach	stomach
21	chr9:96898000-96901800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:96898200-96900800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:96898200-96900800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:96898200-96900800	Weak transcription	HSMM	muscle
25	chr9:96898200-96900800	Weak transcription	NH-A	brain
26	chr9:96898200-96901000	Weak transcription	Osteobl	bone
27	chr9:96898200-96901400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr9:96898200-96901400	Weak transcription	NHDF-Ad	bronchial
29	chr9:96898200-96901400	Weak transcription	NHLF	lung
30	chr9:96898200-96901600	Weak transcription	Fetal Lung	lung
31	chr9:96898200-96902000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr9:96898200-96902200	Weak transcription	Colon Smooth Muscle	Colon
33	chr9:96898200-96902400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:96898400-96900600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:96898400-96900800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:96898400-96900800	Weak transcription	HUVEC	blood vessel
37	chr9:96898400-96901400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr9:96898400-96901400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr9:96898400-96902200	Enhancers	K562	blood
40	chr9:96898600-96900800	Weak transcription	Brain Substantia Nigra	brain
41	chr9:96899400-96900800	Weak transcription	NHEK	skin
42	chr9:96899600-96903800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:96899800-96900800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr9:96900200-96900600	Enhancers	Primary hematopoietic stem cells	blood
45	chr9:96900200-96901000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr9:96900200-96902000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr9:96900400-96900600	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr9:96900400-96901800	Enhancers	HSMMtube	muscle
49	chr9:96900400-96907400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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