Variant report

Variant	rs7855308
Chromosome Location	chr9:16730678-16730679
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10738454	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10756795	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1330302	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1411429	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1411430	0.92[ASN][1000 genomes]
rs1537004	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1854694	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1888205	0.83[ASN][1000 genomes]
rs2150090	0.92[ASN][1000 genomes]
rs2183408	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2275255	0.82[ASN][1000 genomes]
rs2840290	0.92[ASN][1000 genomes]
rs3850446	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3850447	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3904154	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4961739	0.83[ASN][1000 genomes]
rs4961740	0.83[ASN][1000 genomes]
rs4961742	0.83[ASN][1000 genomes]
rs4961744	0.83[ASN][1000 genomes]
rs7040406	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7869097	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16728200-16732600	Weak transcription	NHEK	skin
2	chr9:16728200-16744600	Weak transcription	Fetal Intestine Large	intestine
3	chr9:16728400-16733600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:16728400-16736200	Weak transcription	HSMMtube	muscle
5	chr9:16728400-16743200	Weak transcription	Fetal Kidney	kidney
6	chr9:16728400-16744200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:16728600-16731200	Weak transcription	HSMM	muscle
8	chr9:16728600-16732400	Weak transcription	Adipose Nuclei	Adipose
9	chr9:16728600-16732600	Weak transcription	NHDF-Ad	bronchial
10	chr9:16728800-16743400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:16729000-16731000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:16729000-16734400	Weak transcription	NHLF	lung
13	chr9:16729000-16743200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:16729400-16730800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr9:16729400-16744400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr9:16729600-16744200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr9:16729800-16735600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:16729800-16743400	Weak transcription	Osteobl	bone
19	chr9:16730000-16730800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:16730000-16732000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:16730000-16732600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:16730000-16738200	Weak transcription	NH-A	brain
23	chr9:16730000-16744600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:16730200-16730800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:16730200-16730800	Enhancers	Ovary	ovary
26	chr9:16730200-16743400	Weak transcription	Fetal Stomach	stomach
27	chr9:16730200-16748200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:16730400-16730800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
29	chr9:16730400-16731600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:16730400-16731800	Enhancers	H1 Cell Line	embryonic stem cell
31	chr9:16730400-16732200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:16730600-16730800	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr9:16730600-16730800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr9:16730600-16731000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr9:16730600-16731400	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr9:16730600-16732400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr9:16730600-16735200	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr9:16730600-16735400	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr9:16730600-16735400	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr9:16730600-16735400	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr9:16730600-16744400	Weak transcription	Colon Smooth Muscle	Colon

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