Variant report

Variant	rs7855456
Chromosome Location	chr9:116871831-116871832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116870953..116873166-chr9:117066845..117069372,2	MCF-7	breast:
2	chr9:116856264..116859004-chr9:116870407..116871935,2	MCF-7	breast:
3	chr9:116871367..116873297-chr9:116878606..116880633,2	K562	blood:
4	chr9:116870237..116871907-chr9:116924776..116927376,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196739	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10982066	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12341405	0.95[YRI][hapmap]
rs1570589	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28699378	0.93[ASN][1000 genomes]
rs61073878	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	esv2422396	chr9:116792944-117354862	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
3	esv2422492	chr9:116811294-117366643	Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
4	esv2761285	chr9:116811897-117103268	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
5	nsv870215	chr9:116842614-117070344	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	124 gene(s)	inside rSNPs	diseases
6	nsv893751	chr9:116846467-116874355	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116870000-116873400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:116870000-116873400	Enhancers	A549	lung
3	chr9:116870400-116874800	Weak transcription	Right Atrium	heart
4	chr9:116870600-116872200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:116870600-116872600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:116870600-116875400	Weak transcription	Right Ventricle	heart
7	chr9:116870800-116872200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:116870800-116875200	Weak transcription	Stomach Mucosa	stomach
9	chr9:116870800-116875600	Weak transcription	Fetal Intestine Large	intestine
10	chr9:116870800-116875600	Weak transcription	Fetal Lung	lung
11	chr9:116871000-116874600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:116871000-116875800	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:116871200-116872200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:116871200-116872800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:116871400-116875000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:116871400-116878400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:116871600-116873200	Enhancers	HepG2	liver
18	chr9:116871600-116874600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:116871600-116878400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:116871800-116872000	Enhancers	Brain Inferior Temporal Lobe	brain

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