Variant report

Variant	rs7855532
Chromosome Location	chr9:96051839-96051840
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EGR1	chr9:96051820-96052328	MCF-7	breast:	n/a	chr9:96051949-96051959
2	MXI1	chr9:96051797-96052297	HepG2	liver:	n/a	chr9:96052037-96052046
3	POLR2A	chr9:96048582-96052056	PFSK-1	brain:	n/a	n/a
4	FOSL2	chr9:96051799-96052368	MCF-7	breast:	n/a	chr9:96052114-96052124 chr9:96052114-96052124 chr9:96052115-96052123 chr9:96052114-96052124 chr9:96052029-96052040
5	POLR2A	chr9:96051676-96052265	HepG2	liver:	n/a	n/a
6	JUND	chr9:96051671-96052443	MCF-7	breast:	n/a	chr9:96052114-96052124 chr9:96052113-96052124 chr9:96052114-96052124 chr9:96052115-96052123 chr9:96052114-96052124
7	TCF12	chr9:96051824-96052416	MCF-7	breast:	n/a	n/a
8	CEBPB	chr9:96051794-96052352	MCF-7	breast:	n/a	chr9:96052065-96052076
9	POLR2A	chr9:96051360-96052298	PFSK-1	brain:	n/a	n/a
10	NR2F2	chr9:96051652-96052464	MCF-7	breast:	n/a	n/a
11	EGR1	chr9:96051829-96052318	MCF-7	breast:	n/a	chr9:96051949-96051959
12	HDAC2	chr9:96051818-96052432	MCF-7	breast:	n/a	n/a
13	FOSL2	chr9:96051798-96052320	HepG2	liver:	n/a	chr9:96052114-96052124 chr9:96052114-96052124 chr9:96052115-96052123 chr9:96052114-96052124 chr9:96052029-96052040
14	CEBPB	chr9:96051815-96052351	MCF-7	breast:	n/a	chr9:96052065-96052076
15	GATA3	chr9:96051651-96052411	MCF-7	breast:	n/a	n/a
16	GATA3	chr9:96051814-96052445	MCF-7	breast:	n/a	n/a
17	FOSL2	chr9:96051799-96052323	HepG2	liver:	n/a	chr9:96052114-96052124 chr9:96052114-96052124 chr9:96052115-96052123 chr9:96052114-96052124 chr9:96052029-96052040
18	MAX	chr9:96051817-96052466	MCF-7	breast:	n/a	n/a
19	SIN3AK20	chr9:96051690-96052541	MCF-7	breast:	n/a	n/a
20	FOSL2	chr9:96051816-96052318	A549	lung:	n/a	chr9:96052114-96052124 chr9:96052114-96052124 chr9:96052115-96052123 chr9:96052114-96052124 chr9:96052029-96052040
21	NR2F2	chr9:96051611-96052426	MCF-7	breast:	n/a	n/a
22	FOXP2	chr9:96051797-96052179	PFSK-1	brain:	n/a	n/a
23	EP300	chr9:96051832-96052193	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95895371..95897569-chr9:96051553..96053776,2	MCF-7	breast:
2	chr9:96050880..96053674-chr9:96053740..96056815,3	MCF-7	breast:

Variant related genes	Relation type
WNK2	TF binding region
ENSG00000131669	Chromatin interaction
ENSG00000165238	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2298245	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34492909	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3907220	0.82[ASN][1000 genomes]
rs4112205	0.82[ASN][1000 genomes]
rs55705104	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55706397	1.00[AFR][1000 genomes]
rs7022051	0.91[ASN][1000 genomes]
rs72743433	0.93[AFR][1000 genomes]
rs72743435	0.93[AFR][1000 genomes]
rs9657693	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893583	chr9:95996573-96091688	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96027200-96056000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:96027200-96061000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:96031400-96054600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:96031400-96055000	Weak transcription	Colonic Mucosa	Colon
5	chr9:96031400-96062800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:96033000-96054600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:96033000-96055000	Weak transcription	Brain Anterior Caudate	brain
8	chr9:96033000-96067200	Weak transcription	Brain Angular Gyrus	brain
9	chr9:96033400-96062800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:96033400-96067000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr9:96033400-96077200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:96033600-96054600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:96033600-96060200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:96033600-96061000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:96033600-96072800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr9:96033800-96054600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr9:96033800-96060400	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:96041000-96052400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr9:96041400-96052000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr9:96041600-96056800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr9:96041800-96054600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr9:96047200-96065000	Weak transcription	Fetal Brain Male	brain
23	chr9:96048200-96054600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr9:96048200-96057200	Weak transcription	Right Atrium	heart
25	chr9:96049000-96054600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr9:96049200-96052200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:96049200-96057600	Strong transcription	Fetal Brain Female	brain
28	chr9:96049400-96057000	Strong transcription	Brain Germinal Matrix	brain
29	chr9:96049600-96054800	Enhancers	Fetal Thymus	thymus
30	chr9:96049800-96052000	Weak transcription	Gastric	stomach
31	chr9:96050000-96056600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr9:96050200-96056800	Strong transcription	Fetal Intestine Small	intestine
33	chr9:96050800-96052000	Enhancers	Right Ventricle	heart
34	chr9:96051000-96052200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:96051000-96052800	Enhancers	HepG2	liver
36	chr9:96051000-96056600	Weak transcription	Left Ventricle	heart
37	chr9:96051200-96052000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr9:96051200-96056200	Weak transcription	Fetal Heart	heart
39	chr9:96051400-96054200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr9:96051400-96056400	Weak transcription	Spleen	Spleen
41	chr9:96051400-96067800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr9:96051600-96052000	Genic enhancers	Fetal Intestine Large	intestine
43	chr9:96051600-96052000	Enhancers	Placenta	Placenta
44	chr9:96051600-96052200	Enhancers	A549	lung
45	chr9:96051600-96052200	Enhancers	HMEC	breast
46	chr9:96051600-96052400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr9:96051600-96052400	Enhancers	Muscle Satellite Cultured Cells	--
48	chr9:96051600-96052800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:96051600-96053400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:96051800-96052000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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