Variant report

Variant	rs7855857
Chromosome Location	chr9:79451397-79451398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10869834	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10869835	0.83[AMR][1000 genomes]
rs10869837	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11145085	0.87[EUR][1000 genomes]
rs11145093	0.85[ASN][1000 genomes]
rs1343394	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2000288	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2000289	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7022561	0.87[EUR][1000 genomes]
rs7039403	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7867564	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2758190	chr9:79365865-79673907	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759697	chr9:79365865-79673907	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1054381	chr9:79450930-79500447	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79435600-79455800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:79441400-79461000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:79449000-79452400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:79449000-79452600	Enhancers	Rectal Smooth Muscle	rectum
5	chr9:79449200-79451600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:79449200-79451600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:79449400-79451600	Enhancers	Brain Hippocampus Middle	brain
8	chr9:79449400-79451600	Enhancers	Brain Substantia Nigra	brain
9	chr9:79449400-79451800	Enhancers	NH-A	brain
10	chr9:79449600-79451600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:79449600-79451600	Enhancers	HSMMtube	muscle
12	chr9:79449600-79451800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr9:79449800-79451400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:79449800-79451400	Active TSS	Stomach Smooth Muscle	stomach
15	chr9:79449800-79451600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr9:79449800-79451600	Enhancers	A549	lung
17	chr9:79450000-79451600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:79450000-79454200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:79450000-79478400	Weak transcription	Brain Angular Gyrus	brain
20	chr9:79450600-79451400	Enhancers	NHLF	lung
21	chr9:79450800-79451400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:79450800-79451400	Enhancers	Brain Anterior Caudate	brain
23	chr9:79450800-79451400	Enhancers	Ovary	ovary
24	chr9:79450800-79451400	Flanking Active TSS	NHDF-Ad	bronchial
25	chr9:79451000-79451400	Enhancers	Fetal Stomach	stomach
26	chr9:79451000-79451600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:79451000-79451600	Flanking Active TSS	Colon Smooth Muscle	Colon
28	chr9:79451000-79451600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr9:79451000-79451600	Flanking Active TSS	Osteobl	bone
30	chr9:79451000-79451800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:79451200-79451400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr9:79451200-79452000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr9:79451200-79452000	Genic enhancers	HSMM	muscle
34	chr9:79451200-79455000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:79451200-79459200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:79451200-79459200	Weak transcription	Aorta	Aorta
37	chr9:79451200-79461400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr9:79451200-79467000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr9:79451200-79467000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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