Variant report

Variant	rs7855867
Chromosome Location	chr9:97636294-97636295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97397667..97400545-chr9:97634464..97636466,2	MCF-7	breast:
2	chr9:97634943..97636694-chr9:97648278..97650247,2	MCF-7	breast:
3	chr9:97634532..97637191-chr9:97769954..97772571,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16911698	1.00[CEU][hapmap]
rs7022794	1.00[CEU][hapmap]
rs7035812	1.00[CEU][hapmap]
rs7039870	1.00[CEU][hapmap]
rs7041865	1.00[CEU][hapmap]
rs7048641	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs7860195	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97625000-97637800	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97626000-97638200	Enhancers	HSMM	muscle
3	chr9:97626000-97638400	Enhancers	HSMMtube	muscle
4	chr9:97627200-97638000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:97627400-97637800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:97628600-97641000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:97630000-97638400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:97630000-97645000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:97630200-97636800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:97630200-97637600	Enhancers	Osteobl	bone
11	chr9:97630200-97638000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:97630200-97638200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:97630200-97638200	Enhancers	NHDF-Ad	bronchial
14	chr9:97630200-97640800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr9:97630600-97636800	Enhancers	Fetal Heart	heart
16	chr9:97630600-97637800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr9:97630600-97643600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr9:97630800-97637000	Weak transcription	Fetal Intestine Large	intestine
19	chr9:97630800-97644200	Weak transcription	Adipose Nuclei	Adipose
20	chr9:97631000-97637000	Weak transcription	Brain Substantia Nigra	brain
21	chr9:97631000-97637200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr9:97631000-97637600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:97631000-97637800	Weak transcription	Aorta	Aorta
24	chr9:97631000-97640000	Weak transcription	Brain Hippocampus Middle	brain
25	chr9:97631800-97637800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr9:97631800-97645600	Weak transcription	Small Intestine	intestine
27	chr9:97632000-97637600	Weak transcription	Liver	Liver
28	chr9:97632000-97640600	Weak transcription	K562	blood
29	chr9:97632000-97646000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:97633200-97636400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:97633400-97636800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:97633400-97637200	Enhancers	NHEK	skin
33	chr9:97633400-97638000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr9:97633400-97640600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr9:97633400-97646800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:97633400-97671800	Weak transcription	Esophagus	oesophagus
37	chr9:97633600-97637000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr9:97633600-97637400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr9:97633600-97637600	Weak transcription	Primary B cells from peripheral blood	blood
40	chr9:97633600-97637800	Enhancers	Placenta Amnion	Placenta Amnion
41	chr9:97633800-97636600	Weak transcription	Pancreas	Pancrea
42	chr9:97633800-97637000	Weak transcription	NHLF	lung
43	chr9:97633800-97637200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:97634000-97646600	Weak transcription	Spleen	Spleen
45	chr9:97634000-97646800	Weak transcription	Stomach Mucosa	stomach
46	chr9:97634200-97637200	Weak transcription	Psoas Muscle	Psoas
47	chr9:97634200-97637200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr9:97634400-97637200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr9:97634400-97637400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:97634400-97638400	Enhancers	Hela-S3	cervix

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