Variant report

Variant	rs7855964
Chromosome Location	chr9:93606103-93606104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12555502	1.00[JPT][hapmap]
rs7030222	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893567	chr9:93519280-93609668	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1039761	chr9:93598856-93677831	Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv3433405	chr9:93602131-93606129	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3411483	chr9:93602131-93606229	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93565000-93609000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:93577800-93606200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:93585600-93607800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:93595800-93606600	Weak transcription	Stomach Mucosa	stomach
5	chr9:93596000-93607600	Weak transcription	Fetal Intestine Large	intestine
6	chr9:93598200-93606600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:93599200-93616600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:93600200-93606400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr9:93600200-93613800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:93601800-93642200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:93602000-93606600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr9:93602600-93609200	Weak transcription	Right Ventricle	heart
13	chr9:93604400-93606200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr9:93604400-93616200	Weak transcription	HMEC	breast
15	chr9:93604600-93606200	Genic enhancers	Primary B cells from peripheral blood	blood
16	chr9:93604600-93606600	Strong transcription	Esophagus	oesophagus
17	chr9:93604800-93606200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr9:93604800-93612400	Weak transcription	Placenta	Placenta
19	chr9:93604800-93616600	Weak transcription	NHEK	skin
20	chr9:93604800-93617200	Strong transcription	Spleen	Spleen
21	chr9:93605000-93606200	Weak transcription	Lung	lung
22	chr9:93605000-93606200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr9:93605000-93616400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:93605000-93622800	Weak transcription	Adipose Nuclei	Adipose
25	chr9:93605000-93633000	Weak transcription	Fetal Kidney	kidney
26	chr9:93605200-93608200	Strong transcription	Pancreas	Pancrea
27	chr9:93605200-93616400	Weak transcription	K562	blood
28	chr9:93605400-93606600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:93605400-93612400	Strong transcription	Gastric	stomach
30	chr9:93605400-93614200	Strong transcription	Fetal Stomach	stomach
31	chr9:93605600-93608400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr9:93605600-93612600	Strong transcription	GM12878-XiMat	blood
33	chr9:93605600-93615600	Strong transcription	Duodenum Mucosa	Duodenum
34	chr9:93605600-93617400	Strong transcription	Thymus	Thymus
35	chr9:93605800-93606200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr9:93605800-93607000	Weak transcription	Primary B cells from cord blood	blood
37	chr9:93605800-93621400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr9:93605800-93621600	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr9:93605800-93631000	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr9:93606000-93606200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr9:93606000-93606600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr9:93606000-93606800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr9:93606000-93608200	Strong transcription	Colonic Mucosa	Colon
44	chr9:93606000-93615600	Strong transcription	Fetal Thymus	thymus
45	chr9:93606000-93616600	Strong transcription	Fetal Intestine Small	intestine
46	chr9:93606000-93619600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links