Variant report

Variant	rs7855984
Chromosome Location	chr9:100818290-100818291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:100818176-100818329	HepG2	liver:	n/a	n/a
2	POLR2A	chr9:100818283-100819310	HCT-116	colon:	n/a	n/a
3	STAT5A	chr9:100818289-100818901	GM12878	blood:	n/a	n/a
4	MAX	chr9:100818236-100820105	HCT-116	colon:	n/a	n/a
5	POLR2A	chr9:100818240-100819665	HCT-116	colon:	n/a	n/a
6	CHD1	chr9:100818224-100820370	IMR90	lung:	n/a	n/a
7	MXI1	chr9:100818280-100820264	SK-N-SH	brain:	n/a	n/a

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100744471..100747062-chr9:100817673..100820807,4	MCF-7	breast:
2	chr9:100817834..100821135-chr9:100954026..100958556,6	MCF-7	breast:
3	chr9:100745249..100747545-chr9:100817221..100819862,3	K562	blood:
4	chr9:100815800..100818586-chr9:100880425..100882784,2	MCF-7	breast:
5	chr9:100684278..100686693-chr9:100816052..100820620,8	K562	blood:
6	chr9:100682922..100687440-chr9:100817123..100820939,8	MCF-7	breast:
7	chr9:100793900..100798932-chr9:100816820..100821233,8	MCF-7	breast:
8	chr9:100683217..100685598-chr9:100817702..100819594,2	MCF-7	breast:
9	chr9:100817689..100820206-chr9:101017310..101019410,4	MCF-7	breast:
10	chr9:100679913..100686278-chr9:100816188..100820459,11	K562	blood:
11	chr9:100742340..100750312-chr9:100816953..100823782,17	MCF-7	breast:
12	chr9:100677016..100678517-chr9:100817759..100820189,2	MCF-7	breast:
13	chr9:100817802..100822153-chr9:100831375..100837110,8	MCF-7	breast:
14	chr9:100818120..100820344-chrX:153624608..153627230,2	MCF-7	breast:
15	chr9:100817966..100819958-chr9:100840027..100843917,3	K562	blood:
16	chr9:100817775..100822653-chr9:100832609..100840095,16	MCF-7	breast:
17	chr9:100743079..100747890-chr9:100817276..100822371,7	K562	blood:

No data

Variant related genes	Relation type
NANS	TF binding region
ENSG00000106789	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000147403	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000095383	Chromatin interaction
ENSG00000201830	Chromatin interaction
ENSG00000236896	Chromatin interaction
ENSG00000106785	Chromatin interaction
ENSG00000212521	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10124238	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1058446	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10818454	0.94[ASN][1000 genomes]
rs10818468	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10818472	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10984977	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12348197	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12349452	1.00[ASN][1000 genomes]
rs16912590	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28489815	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7874696	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969738	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9969813	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100807600-100818400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:100808400-100818400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:100808400-100818400	Weak transcription	Fetal Thymus	thymus
4	chr9:100808800-100818400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr9:100810200-100818400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr9:100812400-100818400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr9:100816600-100818400	Weak transcription	Primary B cells from cord blood	blood
8	chr9:100816600-100818400	Enhancers	K562	blood
9	chr9:100816800-100818400	Weak transcription	Primary T cells from cord blood	blood
10	chr9:100816800-100818400	Enhancers	GM12878-XiMat	blood
11	chr9:100817800-100818400	Enhancers	Primary hematopoietic stem cells	blood
12	chr9:100818200-100818400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:100818200-100818400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:100818200-100818400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr9:100818200-100818400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr9:100818200-100818400	Enhancers	Primary B cells from peripheral blood	blood
17	chr9:100818200-100818400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr9:100818200-100818400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr9:100818200-100818400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr9:100818200-100818400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr9:100818200-100818400	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr9:100818200-100818400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr9:100818200-100818400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:100818200-100818400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:100818200-100818400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:100818200-100818400	Active TSS	Adipose Nuclei	Adipose
27	chr9:100818200-100818400	Enhancers	Brain Cingulate Gyrus	brain
28	chr9:100818200-100818400	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr9:100818200-100818400	Active TSS	Duodenum Mucosa	Duodenum
30	chr9:100818200-100818400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr9:100818200-100818400	Enhancers	Fetal Heart	heart
32	chr9:100818200-100818400	Enhancers	Fetal Muscle Trunk	muscle
33	chr9:100818200-100818400	Enhancers	Fetal Muscle Leg	muscle
34	chr9:100818200-100818400	Enhancers	Placenta	Placenta
35	chr9:100818200-100818400	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr9:100818200-100818400	Active TSS	Rectal Mucosa Donor 31	rectum
37	chr9:100818200-100818400	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr9:100818200-100818400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr9:100818200-100818400	Enhancers	Stomach Smooth Muscle	stomach
40	chr9:100818200-100818400	Enhancers	Thymus	Thymus
41	chr9:100818200-100818400	Enhancers	HMEC	breast
42	chr9:100818200-100818400	Weak transcription	HSMMtube	muscle
43	chr9:100818200-100818400	Active TSS	Monocytes-CD14+_RO01746	blood
44	chr9:100818200-100818400	Enhancers	NHEK	skin
45	chr9:100818200-100818600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr9:100818200-100818600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr9:100818200-100818600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr9:100818200-100818600	Flanking Active TSS	Hela-S3	cervix
49	chr9:100818200-100818600	Flanking Active TSS	HUVEC	blood vessel
50	chr9:100818200-100818600	Flanking Active TSS	Osteobl	bone

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