Variant report

Variant	rs7856386
Chromosome Location	chr9:110425326-110425327
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10759246	0.81[ASN][1000 genomes]
rs1523780	0.81[ASN][1000 genomes]
rs1523781	0.81[ASN][1000 genomes]
rs1523782	0.81[ASN][1000 genomes]
rs4540459	0.81[ASN][1000 genomes]
rs58497450	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs58699609	0.98[ASN][1000 genomes]
rs58863066	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59334406	1.00[AFR][1000 genomes]
rs60427111	1.00[AFR][1000 genomes]
rs61009260	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7849612	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7850292	0.98[AFR][1000 genomes]
rs7854757	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv521747	chr9:110418574-110441113	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv519833	chr9:110424575-110430339	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110413000-110437000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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