Variant report

Variant	rs78564308
Chromosome Location	chr13:50014492-50014493
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50013502..50016015-chr13:50068967..50071697,2	K562	blood:
2	chr13:50007011..50008886-chr13:50012564..50014839,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136147	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047311	chr13:49895019-50224227	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv430558	chr13:49914393-50059354	Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv430559	chr13:49930369-50059354	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv430560	chr13:49930643-50059354	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv430562	chr13:49930643-50067246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv430561	chr13:49930643-50089844	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv430564	chr13:49945247-50059354	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv430566	chr13:49945247-50089844	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv430571	chr13:49961137-50059354	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv430570	chr13:49961137-50089844	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	esv1807924	chr13:49991885-50036730	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	esv1796315	chr13:49992988-50031868	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
13	nsv523648	chr13:50005444-50086266	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv561613	chr13:50013622-50086266	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
15	nsv900070	chr13:50013622-50087142	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49978400-50016800	Weak transcription	Fetal Brain Male	brain
2	chr13:49983400-50017000	Weak transcription	Brain Anterior Caudate	brain
3	chr13:49983400-50017400	Weak transcription	Lung	lung
4	chr13:49983600-50017000	Weak transcription	Brain Angular Gyrus	brain
5	chr13:49993800-50017400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:49994000-50016200	Weak transcription	NHLF	lung
7	chr13:49994000-50017000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:49994000-50017200	Weak transcription	HSMM	muscle
9	chr13:49994200-50017200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr13:49994600-50016000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:49994800-50017200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr13:49995400-50017000	Weak transcription	Liver	Liver
13	chr13:49995600-50017000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr13:49995800-50017000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr13:49997000-50017000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr13:49997000-50017200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr13:49997400-50017200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr13:49998600-50017000	Weak transcription	Adipose Nuclei	Adipose
19	chr13:49999000-50017400	Weak transcription	Small Intestine	intestine
20	chr13:50000200-50017200	Weak transcription	Fetal Intestine Small	intestine
21	chr13:50000400-50017000	Weak transcription	Fetal Lung	lung
22	chr13:50000600-50017400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr13:50002600-50017000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr13:50002600-50017000	Weak transcription	HSMMtube	muscle
25	chr13:50002800-50017000	Weak transcription	Primary T cells from cord blood	blood
26	chr13:50002800-50017000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr13:50002800-50017200	Weak transcription	Fetal Muscle Leg	muscle
28	chr13:50003000-50017000	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr13:50003000-50017200	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr13:50003400-50017000	Weak transcription	Brain Germinal Matrix	brain
31	chr13:50003400-50017200	Weak transcription	Fetal Stomach	stomach
32	chr13:50003400-50017200	Weak transcription	Ovary	ovary
33	chr13:50005200-50017000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr13:50005200-50017200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr13:50006600-50016200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr13:50006800-50016200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr13:50006800-50017000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr13:50007200-50017200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr13:50007200-50017200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr13:50007400-50017000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr13:50007400-50017200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr13:50007400-50017200	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr13:50007600-50016800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr13:50007600-50017200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr13:50008000-50016200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr13:50008200-50017000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr13:50008200-50017200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr13:50008400-50017000	Weak transcription	Fetal Brain Female	brain
49	chr13:50008400-50017400	Weak transcription	Left Ventricle	heart
50	chr13:50008600-50016000	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links