Variant report

Variant	rs78567501
Chromosome Location	chr9:116020998-116020999
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116016494..116018131-chr9:116019825..116021408,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv893746	chr9:115983540-116022826	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv982339	chr9:116020978-116021478	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115985800-116021000	Weak transcription	Fetal Stomach	stomach
2	chr9:115987800-116021000	Weak transcription	Hela-S3	cervix
3	chr9:115996000-116022200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr9:115996000-116031600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:115996200-116022400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr9:116008200-116037000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:116009600-116029800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr9:116010200-116031800	Weak transcription	Fetal Heart	heart
9	chr9:116011400-116028800	Weak transcription	Fetal Kidney	kidney
10	chr9:116011600-116021000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr9:116013400-116022200	Weak transcription	Gastric	stomach
12	chr9:116014200-116021000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:116014400-116021000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:116014400-116022200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr9:116015400-116021000	Weak transcription	Thymus	Thymus
16	chr9:116016400-116021000	Weak transcription	Lung	lung
17	chr9:116016400-116022200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:116016800-116021000	Weak transcription	Pancreas	Pancrea
19	chr9:116017000-116021000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:116017000-116022200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:116017200-116021000	Weak transcription	Spleen	Spleen
22	chr9:116017200-116022200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr9:116017200-116023000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:116017400-116023200	Strong transcription	HepG2	liver
25	chr9:116017400-116023600	Strong transcription	Fetal Intestine Small	intestine
26	chr9:116017400-116025800	Strong transcription	Fetal Muscle Leg	muscle
27	chr9:116017600-116026400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:116017600-116031800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr9:116017800-116021200	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:116017800-116025200	Strong transcription	Left Ventricle	heart
31	chr9:116017800-116025400	Strong transcription	Fetal Brain Female	brain
32	chr9:116017800-116026400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:116018000-116021000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr9:116018000-116021000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr9:116018000-116021200	Strong transcription	K562	blood
36	chr9:116018000-116024600	Weak transcription	HMEC	breast
37	chr9:116018000-116025000	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr9:116018000-116027600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr9:116018200-116022200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr9:116018200-116024200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr9:116018200-116026200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:116018400-116022600	Strong transcription	NH-A	brain
43	chr9:116018400-116023000	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr9:116018400-116024400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr9:116018400-116024600	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr9:116018400-116024800	Strong transcription	NHEK	skin
47	chr9:116018400-116025200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr9:116018400-116026000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr9:116018600-116021000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr9:116018600-116021400	Genic enhancers	Liver	Liver

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