Variant report

Variant	rs7857083
Chromosome Location	chr9:136691033-136691034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136675111..136676844-chr9:136688260..136691253,2	K562	blood:
2	chr9:136688132..136689983-chr9:136690497..136693313,2	MCF-7	breast:
3	chr9:136686248..136688046-chr9:136689663..136693225,3	K562	blood:
4	chr9:136689629..136691497-chr9:136855845..136857956,2	MCF-7	breast:
5	chr9:136689578..136693594-chr9:136695126..136697537,4	K562	blood:

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7035577	1.00[MEX][hapmap]
rs7851180	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7862391	1.00[MEX][hapmap]
rs7876027	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv428546	chr9:136541745-136720872	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv894117	chr9:136600201-136716399	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv831746	chr9:136607829-136750740	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv894121	chr9:136629399-136692787	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1035272	chr9:136665308-136772256	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	esv3481760	chr9:136690631-136695429	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136658600-136691400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:136658800-136705400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:136659000-136702200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:136661400-136693800	Weak transcription	HMEC	breast
5	chr9:136669000-136691200	Weak transcription	NH-A	brain
6	chr9:136670000-136692600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:136673200-136705000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:136674600-136699000	Weak transcription	Aorta	Aorta
9	chr9:136675200-136728400	Weak transcription	Esophagus	oesophagus
10	chr9:136675400-136691600	Weak transcription	Lung	lung
11	chr9:136675400-136703200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr9:136675400-136709400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr9:136675600-136698000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:136675600-136704800	Weak transcription	Adipose Nuclei	Adipose
15	chr9:136676000-136699800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:136677000-136705000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:136679200-136696800	Weak transcription	Gastric	stomach
18	chr9:136679800-136691600	Weak transcription	Brain Hippocampus Middle	brain
19	chr9:136680000-136696800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr9:136680200-136691200	Weak transcription	Fetal Brain Female	brain
21	chr9:136680200-136691400	Weak transcription	Right Ventricle	heart
22	chr9:136680200-136691800	Weak transcription	Right Atrium	heart
23	chr9:136680200-136693600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:136680200-136693800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr9:136682200-136692400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:136682200-136701000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:136683800-136705000	Weak transcription	NHDF-Ad	bronchial
28	chr9:136684000-136694400	Weak transcription	Hela-S3	cervix
29	chr9:136684200-136691200	Strong transcription	Fetal Intestine Small	intestine
30	chr9:136684200-136696800	Weak transcription	Osteobl	bone
31	chr9:136684200-136704800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr9:136684600-136691600	Weak transcription	Brain Substantia Nigra	brain
33	chr9:136686000-136709600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr9:136686200-136692200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr9:136686600-136692200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:136686600-136705000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:136686800-136692200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr9:136687000-136692000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr9:136687000-136692200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr9:136687000-136692200	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr9:136687000-136697000	Weak transcription	Pancreas	Pancrea
42	chr9:136687400-136692200	Enhancers	H1 Cell Line	embryonic stem cell
43	chr9:136687600-136691400	Weak transcription	Fetal Brain Male	brain
44	chr9:136687600-136705000	Weak transcription	HSMMtube	muscle
45	chr9:136688200-136691400	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr9:136688200-136691600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr9:136688600-136692000	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr9:136688600-136693600	Weak transcription	Liver	Liver
49	chr9:136688800-136691800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr9:136688800-136692000	Enhancers	HUES6 Cell Line	embryonic stem cell

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