Variant report

Variant	rs7857290
Chromosome Location	chr9:116741892-116741893
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116730757..116736109-chr9:116740436..116744614,4	MCF-7	breast:
2	chr9:116736580..116738350-chr9:116740144..116742720,2	K562	blood:
3	chr9:116727515..116730284-chr9:116741315..116743869,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7034053	0.83[AFR][1000 genomes]
rs7039576	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116717200-116754600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:116720400-116754200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:116720800-116750600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:116721200-116750800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:116721200-116756400	Weak transcription	NHEK	skin
6	chr9:116721400-116751200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:116728200-116754600	Weak transcription	Thymus	Thymus
8	chr9:116730000-116743200	Weak transcription	Liver	Liver
9	chr9:116731800-116755600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr9:116732000-116750600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:116732000-116750600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:116732000-116750600	Weak transcription	HMEC	breast
13	chr9:116732000-116753000	Weak transcription	Esophagus	oesophagus
14	chr9:116732200-116743600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:116732200-116750000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr9:116732200-116750800	Weak transcription	Adipose Nuclei	Adipose
17	chr9:116732200-116753800	Weak transcription	Fetal Brain Female	brain
18	chr9:116732200-116754200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr9:116732200-116768800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:116732200-116773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr9:116732400-116743200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:116732400-116745800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:116732400-116750400	Weak transcription	Brain Germinal Matrix	brain
24	chr9:116732600-116762600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr9:116733000-116768600	Weak transcription	Fetal Kidney	kidney
26	chr9:116733400-116743000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:116733400-116748400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:116733600-116750200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr9:116734000-116746400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:116734200-116750200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:116734200-116750400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:116734200-116750600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:116734400-116746400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr9:116734400-116746600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:116735000-116743200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr9:116735000-116750600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr9:116735800-116754200	Weak transcription	Right Ventricle	heart
39	chr9:116736000-116746000	Weak transcription	Fetal Lung	lung
40	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr9:116736600-116754000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr9:116736800-116742000	Weak transcription	Aorta	Aorta
43	chr9:116736800-116750200	Weak transcription	Fetal Intestine Large	intestine
44	chr9:116736800-116750600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:116736800-116751600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr9:116737000-116744000	Weak transcription	Fetal Muscle Leg	muscle
47	chr9:116737200-116746400	Weak transcription	Fetal Intestine Small	intestine
48	chr9:116737200-116750200	Weak transcription	A549	lung
49	chr9:116737200-116750600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr9:116738200-116750800	Weak transcription	Brain Hippocampus Middle	brain

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